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Updated: Oct 5, 2026

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Published on: November 27, 2016
Caspase-activated DNase/DNA fragmentation factor 40 mediates apoptotic DNA fragmentation in transient cerebral
1Department of Neurology, Pittsburgh Institute for Neurodegenerative Disorders, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania 15261, USA.
Abstract:
Nuclear changes, including internucleosomal DNA fragmentation, are characteristic features of neuronal apoptosis resulting from transient cerebral ischemia and related brain insults for which the molecular mechanism has not been elucidated. Recent studies suggest that a caspase-3-mediated mechanism may be involved in the process of nuclear degradation in ischemic neurons. In this study, we cloned from rat brain a homolog cDNA encoding caspase-activated deoxyribonuclease (CAD)/DNA fragmentation factor 40 (DFF40), a 40 kDa nuclear enzyme that is activated by caspase-3 and promotes apoptotic DNA degradation. Subsequently, we investigated the role of CAD/DFF40 in the induction of internucleosomal DNA fragmentation in the hippocampus in a rat model of transient global ischemia and in primary neuronal cultures under ischemia-like conditions. At 8-72 hr after ischemia, CAD/DFF40 mRNA and protein were induced in the degenerating hippocampal CA1 neurons. CAD/DFF40 formed a heterodimeric complex in the nucleus with its natural inhibitor CAD (ICAD) and was activated after ischemia in a delayed manner (>24 hr) by caspase-3, which translocated into the nucleus and cleaved ICAD. Furthermore, an induced CAD/DFF40 activity was detected in nuclear extracts in both in vivo and in vitro models, and the DNA degradation activity of CAD/DFF40 was inhibited by purified ICAD protein. These results strongly suggest that CAD/DFF40 is the endogenous endonuclease that mediates caspase-3-dependent internucleosomal DNA degradation and related nuclear alterations in ischemic neurons.
Insights
This study identifies caspase-activated deoxyribonuclease (CAD)/DNA fragmentation factor 40 (DFF40) as the key enzyme responsible for DNA fragmentation in ischemic neurons. This finding elucidates a crucial mechanism in neuronal apoptosis following brain insults.
Area of Science:
- Neuroscience
- Molecular Biology
- Biochemistry
Background:
- Neuronal apoptosis involves nuclear changes like DNA fragmentation, but the precise molecular mechanisms in cerebral ischemia remain unclear.
- Caspase-3 is a suspected mediator of nuclear degradation in ischemic neurons.
Purpose of the Study:
- To elucidate the molecular mechanism of internucleosomal DNA fragmentation in ischemic neurons.
- To investigate the role of caspase-activated deoxyribonuclease (CAD)/DNA fragmentation factor 40 (DFF40) in neuronal apoptosis after transient global ischemia.
Main Methods:
- Cloning of rat brain homolog cDNA encoding CAD/DFF40.
- Investigating CAD/DFF40 expression and activity in vivo (rat model of transient global ischemia) and in vitro (primary neuronal cultures under ischemia-like conditions).
- Assessing CAD/DFF40 activation via caspase-3 and its interaction with its inhibitor ICAD.
Main Results:
- CAD/DFF40 mRNA and protein were induced in hippocampal CA1 neurons post-ischemia (8-72 hr).
- Ischemia induced delayed activation (>24 hr) of CAD/DFF40 by nuclear translocation and ICAD cleavage by caspase-3.
- CAD/DFF40 DNA degradation activity was confirmed in nuclear extracts and inhibited by ICAD.
Conclusions:
- CAD/DFF40 is the endogenous endonuclease mediating caspase-3-dependent internucleosomal DNA degradation in ischemic neurons.
- This research clarifies a key pathway in nuclear alterations during neuronal apoptosis in brain insults.
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