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Updated: Oct 5, 2026

Multi-Gene Single Nucleotide Polymorphism Detection in Gastric Cancer Based on Ion Semiconductor Sequencing Platform
Published on: May 10, 2024
Microsatellite alterations and target gene mutations in the early stages of multiple gastric cancer
1Department of Pathology, Yamagata University School of Medicine, Yamagata, Japan.
Abstract:
Multiple gastric cancers may develop through the same genetic background: the mutator pathway due to defects in DNA mismatch repair genes, or the suppressor pathway due to defects in tumour suppressor genes. To clarify the critical genetic events in the early stages of multiple gastric cancer development, 29 early and four advanced gastric cancers were examined from 12 patients. Microsatellite alterations were studied involving microsatellite instability (MSI) and loss of heterozygosity (LOH) at tumour suppressor loci, representative of the mutator pathway and the suppressor pathway, respectively, as well as mutations of target genes (TGF-beta RII, BAX, hMSH3, and E2F-4). MSI was determined in ten cancers (10/33; 30.3%) from seven patients (7/12; 58.3%). LOH was detected in six cancers (6/33; 18.2%) from five patients (5/12; 41.7%), most frequently at TP53, in four cancers (4/33; 12.1%) from four patients (4/12; 33.3%). In cases with multiple gastric cancers in the same stomach, the MSI status was generally the same, but in two patients (2/12; 16.8%) a tumour with MSI-H and another with LOH were found to co-exist in the same stomach. As for mutations of the target genes, it was found that E2F-4 was mutated in six cancers (6/33; 18.2%) from four patients (4/12; 33.3%). Furthermore, identical E2F-4 mutations were detected in four of the six intestinal metaplastic mucosae adjacent to each cancer carrying an E2F-4 mutation. No mutations were detected in the other target genes. In conclusion, the present results indicate that the majority of multiple gastric cancers develop from the same genetic background, with the mutator pathway playing a more important role than the suppressor pathway. Mutations of E2F-4 are early events in multiple gastric cancer development, occurring even in the intestinal metaplastic mucosa, with mutations of other target genes to follow during cancer progression.
Insights
Multiple gastric cancers often arise from a common genetic origin, primarily through the mutator pathway involving DNA mismatch repair defects. Early genetic events, such as E2F-4 mutations in metaplastic mucosa, drive multiple gastric cancer development.
Area of Science:
- Gastroenterology
- Oncology
- Molecular Biology
Background:
- Multiple gastric cancers can originate from shared genetic alterations.
- Two main pathways are implicated: the mutator pathway (DNA mismatch repair gene defects) and the suppressor pathway (tumor suppressor gene defects).
Purpose of the Study:
- To identify critical early genetic events in the development of multiple gastric cancers.
- To compare the roles of the mutator and suppressor pathways in gastric cancer formation.
Main Methods:
- Analysis of microsatellite instability (MSI) and loss of heterozygosity (LOH) in 33 gastric cancers from 12 patients.
- Examination of mutations in target genes: TGF-beta RII, BAX, hMSH3, and E2F-4.
- Investigation of mutations in adjacent intestinal metaplastic mucosa.
Main Results:
- MSI was detected in 30.3% of cancers, and LOH in 18.2%, with TP53 being the most frequent LOH site.
- Mutations in E2F-4 were found in 18.2% of cancers, with identical mutations observed in adjacent metaplastic mucosa.
- The mutator pathway appeared more prevalent than the suppressor pathway in multiple gastric cancer development.
Conclusions:
- Multiple gastric cancers predominantly share a common genetic background, with the mutator pathway being a key driver.
- E2F-4 mutations represent early events in gastric cancer development, occurring even in precancerous lesions.
- Further genetic alterations accumulate during cancer progression.

