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Sequencing Small Non-coding RNA from Formalin-fixed Tissues and Serum-derived Exosomes from Castration-resistant Prostate Cancer Patients
Published on: November 19, 2019
The role of epigenetic modifications in retinoic acid receptor beta2 gene expression in human prostate cancers
T Nakayama1, M Watanabe, M Yamanaka
1Second Department of Pathology, Mie University School of Medicine, Mie, Japan.
Abstract:
The retinoic acid receptor (RAR) beta gene is a putative tumor suppressor gene on chromosome 3p24, where a high incidence of loss of heterozygosity is detected in many types of tumors. Retinoic acid suppresses cancer cell growth through binding to RARs, especially RARbeta, indicating a critical role in mediating anticancer effects. Selective loss or down-regulation of RARbeta mRNA and protein has been reported in prostate cancers (PCas), although the mechanisms remain unclear. We investigated the role of epigenetic modification in RARbeta2 gene silencing. Aberrant methylation was detected in 11 of 14 (79%) primary PCas, 9 of 10 (90%) hormone-refractory PCas, and 2 of 4 (50%) PCa cell lines, but not in any normal prostate samples. Chromatin immunoprecipitation assay showed that all RARbeta2-negative cells (LNCaP, PC3, and DU145) were hypoacetylated at both histones H3 and H4. After exposure to 5-aza-2prime;-deoxycytidine treatment, Trichostatin A and all-trans retinoic acid induced partial demethylation, increased accumulation of acetylated histones, and markedly restored the expression of RARbeta2 in RARbeta2-negative cells. These data suggest that the RARbeta2 gene may be one of the frequently silenced genes by epigenetic modifications in PCa.
Insights
Epigenetic silencing of the retinoic acid receptor (RAR) beta2 gene, through aberrant methylation and histone hypoacetylation, is frequent in prostate cancer (PCa). This silencing can be reversed by demethylating and histone deacetylase inhibitor treatments, restoring RARbeta2 expression.
Area of Science:
- Oncology
- Epigenetics
- Molecular Biology
Background:
- The retinoic acid receptor (RAR) beta gene is a potential tumor suppressor located on chromosome 3p24.
- RARbeta plays a crucial role in mediating anticancer effects by suppressing cancer cell growth.
- Loss or down-regulation of RARbeta in prostate cancer (PCa) suggests a role in tumorigenesis, but the mechanisms are unclear.
Purpose of the Study:
- To investigate the role of epigenetic modifications in the silencing of the RARbeta2 gene in prostate cancer.
- To determine if aberrant methylation and histone modifications contribute to RARbeta2 gene silencing in PCa.
Main Methods:
- Analysis of aberrant methylation in primary PCa, hormone-refractory PCa, and PCa cell lines using methylation detection.
- Chromatin immunoprecipitation (ChIP) assay to assess histone acetylation (H3 and H4) in RARbeta2-negative cells.
- Treatment of RARbeta2-negative cells with epigenetic modifiers (5-aza-2'-deoxycytidine, Trichostatin A, all-trans retinoic acid) to assess gene expression restoration.
Main Results:
- Aberrant methylation of the RARbeta2 gene was detected in a high percentage of primary PCa (79%), hormone-refractory PCa (90%), and PCa cell lines (50%), but not in normal prostate samples.
- RARbeta2-negative PCa cells exhibited hypoacetylation of histones H3 and H4.
- Treatment with epigenetic modifiers partially reversed RARbeta2 gene silencing, inducing demethylation, increasing histone acetylation, and restoring RARbeta2 expression.
Conclusions:
- Epigenetic modifications, specifically aberrant methylation and histone hypoacetylation, are implicated in the silencing of the RARbeta2 gene in prostate cancer.
- The RARbeta2 gene is likely frequently silenced by epigenetic mechanisms in PCa.
- Reversal of epigenetic silencing offers a potential therapeutic strategy for restoring RARbeta2 function in prostate cancer.
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