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Related Experiment Videos

SEView: a Java applet for browsing molecular sequence data.

T Junier1, P Bucher

  • 1Swiss Institute for Experimental Cancer Research (ISREC), Epalinges s/Lausanne, Switzerland. tjunier@pcisrec-d402b.unil.ch

In Silico Biology
|July 27, 2001
PubMed
Summary
This summary is machine-generated.

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SEView offers an interactive graphical representation for protein and nucleotide sequences, enhancing data visualization beyond traditional text formats. This versatile Java applet improves accessibility and understanding of biological sequence information via web browsers.

Area of Science:

  • Bioinformatics
  • Computational Biology
  • Molecular Biology

Background:

  • Traditional biological sequence data is often presented in text-based formats.
  • Limitations exist in visualizing complex protein and nucleotide sequence elements from standard database outputs.

Purpose of the Study:

  • To introduce SEView, a Java applet for interactive graphical representation of biological sequences.
  • To provide an alternative to text-based sequence data visualization.
  • To enhance the accessibility and interpretability of sequence information through a WWW browser.

Main Methods:

  • Development of a Java applet named SEView.
  • Implementation of a description language for data format independence.
  • Creation of ad hoc translators for data conversion.

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Main Results:

  • SEView provides an interactive, graphical interface for viewing protein and nucleotide sequences.
  • The system is accessible through a World Wide Web browser.
  • Achieved versatility and flexibility through a description language and translators, enabling independence from source data formats.

Conclusions:

  • SEView offers a valuable tool for visualizing biological sequence data.
  • The graphical and interactive nature of SEView aids in understanding sequence elements.
  • The system's flexible design supports diverse data sources and formats.