Triggering ubiquitination of a CDK inhibitor at origins of DNA replication
L Furstenthal1, C Swanson, B K Kaiser
1Departments of Pathology and Microbiology & Immunology, Stanford University School of Medicine, 300 Pasteur Drive, MC 5324, Palo Alto, California 94305-5324, USA.
Abstract:
To ensure proper timing of the G1-S transition in the cell cycle, the cyclin E-Cdk2 complex, which is responsible for the initiation of DNA replication, is restrained by the p21(Cip1)/p27(Kip1)/p57(Kip2) family of CDK (cyclin-dependent kinase) inhibitors in humans and by the related p27(Xic1) protein in Xenopus. Activation of cyclin E-Cdk2 is linked to the ubiquitination of human p27(Kip1) or Xenopus p27(Xic1) by SCF (for Skp1-Cullin-F-box protein) ubiquitin ligases. For human p27(Kip1), ubiquitination requires direct phosphorylation by cyclin E-Cdk2. We show here that Xic1 ubiquitination does not require phosphorylation by cyclin E-Cdk2, but it does require nuclear accumulation of the Xic1-cyclin E-Cdk2 complex and recruitment of this complex to chromatin by the origin-recognition complex together with Cdc6 replication preinitiation factors; it also requires an activation step necessitating cyclin E-Cdk2-kinase and SCF ubiquitin-ligase activity, and additional factors associated with mini-chromosome maintenance proteins, including the inactivation of geminin. Components of the SCF ubiquitin-ligase complex, including Skp1 and Cul1, are also recruited to chromatin through cyclin E-Cdk2 and the preinitiation complex. Thus, activation of the cyclin E-Cdk2 kinase and ubiquitin-dependent destruction of its inhibitor are spatially constrained to the site of a properly assembled preinitiation complex.
Insights
The cell cycle
Area of Science:
- Cell Biology
- Molecular Biology
- Biochemistry
Background:
- The G1-S transition is tightly regulated to ensure proper cell cycle progression.
- Cyclin E-Cdk2 complex initiates DNA replication but is inhibited by CDK inhibitors like p27(Kip1) and p27(Xic1).
- Ubiquitination by SCF ubiquitin ligases targets these inhibitors for degradation, activating Cyclin E-Cdk2.
Purpose of the Study:
- To elucidate the mechanism of Xenopus p27(Xic1) ubiquitination and degradation.
- To compare the regulation of p27(Xic1) with human p27(Kip1) in cell cycle control.
- To understand the spatial and temporal control of Cyclin E-Cdk2 activation at replication origins.
Main Methods:
- Biochemical assays to study protein-protein interactions and enzymatic activities.
- In vitro ubiquitination assays using purified proteins and cell extracts.
- Analysis of protein localization and recruitment to chromatin using Xenopus egg extracts and replication systems.
Main Results:
- Xenopus p27(Xic1) ubiquitination by SCF ligases does not require direct phosphorylation by Cyclin E-Cdk2, unlike human p27(Kip1).
- Xic1 ubiquitination requires the assembly of a preinitiation complex at chromatin, involving ORC and Cdc6.
- SCF components (Skp1, Cul1) are recruited to chromatin via Cyclin E-Cdk2 and the preinitiation complex, and geminin inactivation is necessary.
Conclusions:
- The activation of Cyclin E-Cdk2 and degradation of its inhibitor p27(Xic1) are spatially restricted to replication origins.
- This localization ensures that DNA replication initiation is precisely coordinated with preinitiation complex assembly.
- The findings reveal a novel mechanism for cell cycle control, linking replication initiation to inhibitor degradation.
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