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Glycan Node Analysis: A Bottom-up Approach to Glycomics
Published on: May 22, 2016
Glycosylations versus conformational preferences of cancer associated mucin core
J Schuman1, D Qiu, R R Koganty
1Department of Medicinal Chemistry, School of Pharmacy, University of Washington, Seattle, WA 98195, USA.
Abstract:
Synthetic oligosaccharide vaccines based on core STn (sialyl alpha2-6 GalNAc) carbohydrate epitopes are being evaluated by a number of biopharmaceutical firms as potential immunotherapeutics in the treatment of mucin-expressing adenocarcinomas. The STn carbohydrate epitopes exist as discontinuous clusters, O-linked to proximal serine and threonine residues within the mucin sequence. In an effort to probe the structure and dynamics of STn carbohydrate clusters as they may exist on the cancer-associated mucin, we have used NMR spectroscopy and MD simulations to study the effect of O-glycosylation of adjacent serine residues in a repeating (Ser)n sequence. Three model peptides/glyco-peptides were studied: a serine trimer containing no carbohydrate groups ((Ser)3 trimer); a serine trimer containing three Tn (GalNAc) carbohydrates alpha-linked to the hydroxyls of adjacent serine sidechains ((Ser.Tn)3 trimer); and a serine trimer containing three STn carbohydrates alpha-linked to the hydroxyls of adjacent serine sidechains ((Ser.STn)3 trimer). Our results demonstrate that clustering of carbohydrates shifts the conformational equilibrium of the underlying peptide backbone into a more extended and rigid state, an arrangement that could function to optimally present the clustered carbohydrate antigen to the immune system. Steric effects appear to drive these changes since an increase in the size of the attached carbohydrate (STn versus Tn) is accompanied by a stronger shift in the equilibrium toward the extended state. In addition, NMR evidence points to the formation of hydrogen bonds between the peptide backbone NH protons and the proximal GalNAc groups in the (Ser.Tn)3 and (Ser.STn)3 trimers. The putative peptide-sugar hydrogen bonds may also play a role in influencing the conformation of the underlying peptide backbone, as well as the orientation of the O-linked carbohydrate. The significance of these results will be discussed within the framework of developing clustered STn-based vaccines, capable of targeting the clustered STn epitopes on the cancer-associated mucin.
Insights
Synthetic vaccines targeting sialyl Tn (STn) carbohydrate clusters show promise for adenocarcinoma treatment. Carbohydrate clustering on peptides induces a more rigid, extended structure, potentially enhancing immune presentation for cancer immunotherapy.
Area of Science:
- Biochemistry
- Immunology
- Glycobiology
Background:
- Adenocarcinomas often express sialyl Tn (STn) carbohydrate epitopes on mucins.
- STn epitopes form discontinuous clusters on O-linked serine/threonine residues.
- Developing effective STn-based cancer vaccines is an ongoing challenge.
Purpose of the Study:
- To investigate the structural and dynamic effects of clustered O-glycosylation on peptide backbones.
- To understand how STn carbohydrate clustering influences antigen presentation for immunotherapy.
Main Methods:
- Utilized Nuclear Magnetic Resonance (NMR) spectroscopy.
- Employed Molecular Dynamics (MD) simulations.
- Studied model peptides: (Ser)3, (Ser.Tn)3, and (Ser.STn)3 trimers.
Main Results:
- Carbohydrate clustering induced a more extended and rigid peptide backbone conformation.
- Increased carbohydrate size (STn vs. Tn) enhanced the shift towards the extended state.
- NMR data suggested hydrogen bond formation between peptide backbone and proximal GalNAc groups.
Conclusions:
- Clustered STn carbohydrates promote a conformation optimal for immune system recognition.
- Hydrogen bonds may stabilize the peptide-carbohydrate structure, influencing antigen presentation.
- Findings support the development of clustered STn vaccines for mucin-expressing adenocarcinomas.
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