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Examination of Proteins Bound to Nascent DNA in Mammalian Cells Using BrdU-ChIP-Slot-Western Technique
Published on: January 15, 2016
Cell cycle-dependent recruitment of HDAC-1 correlates with deacetylation of histone H4 on an Rb-E2F target promoter
R Ferreira1, I Naguibneva, M Mathieu
1Laboratoire 'Oncogenèse, Différenciation et Transduction du Signal', CNRS UPR 9079, Institut Fédératif André Lwoff, 7 rue Guy Moquet, 94801 Villejuif, France.
Abstract:
The transcription factor E2F, which is a key element in the control of cell proliferation, is repressed by Rb and other pocket proteins in growth-arrested differentiating cells, as well as in proliferating cells when they progress through early G1. It is not known whether similar mechanisms are operative in the two situations. A body of data suggests that E2F repression by pocket proteins involves class I histone deacetylases (HDACs). It has been hypothesized that these enzymes are recruited to E2F target promoters where they deacetylate histones. Here we have tested this hypothesis directly by using formaldehyde cross-linked chromatin immunoprecipitation (XChIP) assays to evaluate HDAC association in living cells. Our data show that a histone deacetylase, HDAC-1, is stably bound to an E2F target promoter during early G1 in proliferating cells and released at the G1-S transition. In addition, our results reveal an inverse correlation between HDAC-1 recruitment and histone H4 acetylation on specific lysines.
Insights
Histone deacetylase 1 (HDAC-1) binds E2F target promoters during early G1 in proliferating cells, repressing cell proliferation. HDAC-1 is released at the G1-S transition, correlating with increased histone acetylation.
Area of Science:
- Molecular Biology
- Cell Cycle Regulation
- Epigenetics
Background:
- The transcription factor E2F controls cell proliferation and is repressed by pocket proteins during growth arrest and early G1.
- Class I histone deacetylases (HDACs) are implicated in E2F repression by pocket proteins.
- It is hypothesized that HDACs are recruited to E2F target promoters to deacetylate histones.
Purpose of the Study:
- To directly test the hypothesis that HDACs are recruited to E2F target promoters.
- To investigate the role of HDAC-1 in E2F-mediated repression during the cell cycle.
Main Methods:
- Formaldehyde cross-linked chromatin immunoprecipitation (XChIP) assays were used.
- HDAC association with an E2F target promoter was evaluated in living cells.
Main Results:
- HDAC-1 was found to be stably bound to an E2F target promoter during early G1 in proliferating cells.
- HDAC-1 was released from the promoter at the G1-S transition.
- An inverse correlation was observed between HDAC-1 recruitment and histone H4 acetylation on specific lysines.
Conclusions:
- HDAC-1 is recruited to E2F target promoters during early G1, contributing to cell cycle control.
- HDAC-1 binding and histone deacetylation are dynamically regulated during the G1-S transition.
- These findings provide direct evidence for the role of HDAC-1 in regulating E2F activity and cell proliferation.
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