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Updated: Aug 14, 2026

Repressing Gene Transcription by Redirecting Cellular Machinery with Chemical Epigenetic Modifiers
Published on: September 20, 2018
The HOX homeodomain proteins block CBP histone acetyltransferase activity
W F Shen1, K Krishnan, H J Lawrence
1Department of Medicine, VA Medical Center and University of California, San Francisco, California 94121, USA. wfshen@itsa.ucsf.edu
Insights
HOX proteins interact with CBP/p300, but surprisingly inhibit DNA binding and transcription. These HOX proteins may function as transcription repressors by inhibiting CBP/p300 activity.
Area of Science:
- Molecular Biology
- Genetics
- Transcription Regulation
Background:
- HOX proteins are crucial developmental regulators.
- PBC proteins are known HOX cofactors, enhancing DNA binding and specificity.
- HOX proteins exhibit limited activity in transcription assays, with few identified targets.
Purpose of the Study:
- To investigate interactions between HOX proteins and CBP/p300.
- To elucidate the functional consequences of HOX-CBP/p300 binding on HOX protein activity.
- To explore novel roles for HOX proteins in gene regulation.
Main Methods:
- Co-immunoprecipitation assays to detect protein interactions.
- DNA binding assays to assess complex formation.
- Reporter gene assays to measure transcriptional activity.
- In vitro and in vivo assays to evaluate histone acetyltransferase (HAT) activity inhibition.
Main Results:
- All tested HOX proteins bind to CBP and p300, primarily through their homeodomain.
- CBP/p300 binding inhibits HOX protein DNA binding.
- HOX proteins inhibit CBP/p300 histone acetyltransferase (HAT) activity.
- CBP/p300 fails to potentiate HOX-induced gene activation.
Conclusions:
- HOX proteins interact with CBP/p300, but this interaction is inhibitory rather than cooperative for DNA binding.
- HOX proteins may function as transcription repressors by inhibiting CBP/p300 HAT activity.
- Alternative models for HOX function, potentially independent of CBP HAT, are proposed.
Abstract:
Despite the identification of PBC proteins as cofactors that provide DNA affinity and binding specificity for the HOX homeodomain proteins, HOX proteins do not demonstrate robust activity in transient-transcription assays and few authentic downstream targets have been identified for these putative transcription factors. During a search for additional cofactors, we established that each of the 14 HOX proteins tested, from 11 separate paralog groups, binds to CBP or p300. All six isolated homeodomain fragments tested bind to CBP, suggesting that the homeodomain is a common site of interaction. Surprisingly, CBP-p300 does not form DNA binding complexes with the HOX proteins but instead prevents their binding to DNA. The HOX proteins are not substrates for CBP histone acetyltransferase (HAT) but instead inhibit the activity of CBP in both in vitro and in vivo systems. These mutually inhibitory interactions are reflected by the inability of CBP to potentiate the low levels of gene activation induced by HOX proteins in a range of reporter assays. We propose two models for HOX protein function: (i) HOX proteins may function without CBP HAT to regulate transcription as cooperative DNA binding molecules with PBX, MEIS, or other cofactors, and (ii) the HOX proteins may inhibit CBP HAT activity and thus function as repressors of gene transcription.
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