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Standard deviations and correlations of GC levels in DNA sequences
1Laboratory of Molecular Evolution, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Naples, Italy. clay@infobiogen.fr
Gene
|October 10, 2001
Abstract:
In a DNA sequence that exhibits long-range correlations, standard deviations among the GC levels of its segments can be up to an order of magnitude higher than in a sequence consisting of independent, identically distributed nucleotides. Conversely, plots of inter-segment standard deviations vs. segment length reveal quantitative information about the correlations present in a sequence. We present and discuss formulae that relate long-range (power-law) correlations between the nucleotides of a sequence to the expected standard deviations of the GC levels of its segments, and to the correlations between them.