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Updated: Aug 14, 2026

Combined DNA-RNA Fluorescent In situ Hybridization (FISH) to Study X Chromosome Inactivation in Differentiated Female Mouse Embryonic Stem Cells
Published on: June 14, 2014
Human regulatory factor X 4 (RFX4) is a testis-specific dimeric DNA-binding protein that cooperates with other human
Keiko Morotomi-Yano1, Ken-ichi Yano, Hiroko Saito
1Department of Molecular Diagnosis, Cancer Institute, Japanese Foundation for Cancer Research, 1-37-1 Kami-ikebukuro, Toshima-ku, Tokyo 170-8455, Japan.
Abstract:
Regulatory factor X (RFX) members are evolutionarily conserved transcription factors that share a highly conserved winged helix DNA-binding domain. Human RFX4 has been isolated from breast cancer as a partial cDNA encoding a short RFX-type DNA-binding domain fused to the estrogen receptor, but the entire structure of RFX4 has been unknown. Here, we report the molecular cloning and characterization of human RFX4. RFX4 contains evolutionarily conserved regions, including a RFX-type DNA-binding domain, a dimerization domain, and other conserved regions, and is closely related to RFX1, RFX2, and RFX3 in structure. The expression of RFX4 is restricted to testis. In vitro synthesized RFX4 protein bound to typical RFX binding sites in a sequence-dependent manner. Immunoprecipitation analyses showed that RFX4 interacts physically with RFX2, RFX3, and RFX4 itself but not with RFX1. In contrast to other mammalian RFX members that form dimers, RFX4 is revealed to have no distinct transcriptional activation domains. By using a chimeric protein of RFX1 and RFX4, the C-terminal domain of RFX4 was shown to be a possible transcriptional repression domain. Taken together, these results indicate that RFX4 is the first mammalian member of RFX family without transcriptional activation capacity and might function through selective interactions with other RFX members in transcriptional regulation.
Insights
Regulatory Factor X 4 (RFX4) is a novel transcription factor identified in human testis. Unlike other RFX family members, RFX4 lacks transcriptional activation domains and may function via interactions with other RFX proteins.
Area of Science:
- Molecular biology
- Genetics
- Cancer research
Background:
- Regulatory Factor X (RFX) proteins are conserved transcription factors with a winged helix DNA-binding domain.
- Previous studies identified a partial human RFX4 cDNA in breast cancer, but its full structure and function were unknown.
Purpose of the Study:
- To clone and characterize the full-length human RFX4.
- To investigate RFX4's expression, DNA-binding activity, protein interactions, and transcriptional regulatory function.
Main Methods:
- Molecular cloning and sequencing of human RFX4.
- In vitro synthesis and DNA-binding assays of RFX4 protein.
- Immunoprecipitation to analyze protein-protein interactions.
- Chimeric protein analysis to identify functional domains.
Main Results:
- Human RFX4 possesses conserved RFX domains and shows structural similarity to RFX1-3.
- RFX4 expression is specifically detected in the testis.
- RFX4 binds to canonical RFX binding sites in a sequence-dependent manner.
- RFX4 physically interacts with RFX2, RFX3, and itself, but not RFX1.
- RFX4 lacks transcriptional activation domains and its C-terminal region may act as a repression domain.
Conclusions:
- RFX4 is the first identified mammalian RFX member lacking transcriptional activation capacity.
- RFX4 likely functions in transcriptional regulation through selective interactions with other RFX family members, particularly in the testis.
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