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Methods to Discover Alternative Promoter Usage and Transcriptional Regulation of Murine Bcrp1
Published on: May 27, 2016
Regulation of the PU.1 gene by distal elements.
1Harvard Institutes of Medicine, Harvard Medical School, Boston, MA 02115, USA.
Blood
|November 8, 2001
Summary
The transcription factor PU.1 (also known as Spi-1) is crucial for myeloid cell development. Researchers identified a specific DNA region that controls PU.1 gene expression in myeloid cells.
Area of Science:
- Hematopoiesis
- Molecular Biology
- Gene Regulation
Background:
- The transcription factor PU.1 (Spi-1) is essential for myeloid lineage development.
- Dysregulation of PU.1 expression is linked to erythroleukemia.
- Mechanisms of PU.1 gene regulation in vivo are not well understood.
Purpose of the Study:
- To identify regulatory elements responsible for myeloid cell type-specific expression of the PU.1 gene.
- To investigate the in vivo regulation of PU.1 gene expression.
Main Methods:
- Analysis of a 91-kb murine genomic DNA fragment containing the PU.1 gene and flanking sequences.
- Deoxyribonuclease I hypersensitive site mapping to identify regulatory regions.
- Transfection studies in cell lines and analysis in transgenic animals.
Main Results:
- A 91-kb genomic fragment confers myeloid cell type-specific expression of PU.1.
- At least three clusters of deoxyribonuclease I hypersensitive sites were identified within the PU.1 gene locus.
- A 3.5-kb fragment containing a hypersensitive site at -14 kb 5' of the transcription start site drove myeloid-specific expression in cell lines.
Conclusions:
- A key regulatory element responsible for myeloid-specific PU.1 expression is located approximately 14 kb upstream of the transcription start site.
- Understanding this regulatory element provides insight into PU.1 gene regulation.
- This element could be a tool for targeting gene expression to the myeloid lineage.
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