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Related Experiment Videos

Sequence type analysis and recombinational tests (START).

K A Jolley1, E J Feil, M S Chan

  • 1Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK. keith.jolley@ceid.ox.ac.uk

Bioinformatics (Oxford, England)
|December 26, 2001
PubMed
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The START application aids bacterial population structure studies by analyzing multilocus sequence data. It offers data summary, lineage assignment, and tests for recombination and selection.

Area of Science:

  • Microbiology
  • Bioinformatics
  • Population Genetics

Background:

  • Multilocus sequence data is crucial for understanding bacterial population dynamics.
  • Investigating bacterial population structure requires specialized analytical tools.

Purpose of the Study:

  • To introduce the START (Sequence Typing and Analysis) application.
  • To provide a tool for comprehensive analysis of bacterial population structure using multilocus sequence data.

Main Methods:

  • The START application is a 32-bit Windows program developed in Visual Basic and C++.
  • It processes multilocus sequence data to perform various population genetic analyses.

Main Results:

  • The software facilitates data summarization and bacterial lineage assignment.

Related Experiment Videos

  • It includes functionalities for testing recombination and selection pressures within bacterial populations.

    • Conclusions:

    • START is a valuable resource for researchers studying bacterial population genetics.
    • The application enhances the investigation of bacterial evolution and epidemiology.