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Updated: Oct 3, 2026

In Vivo Alkaline Comet Assay and Enzyme-modified Alkaline Comet Assay for Measuring DNA Strand Breaks and Oxidative DNA Damage in Rat Liver
Published on: May 4, 2016
Reduced ATM kinase activity and an attenuated p53 response to DNA damage in carcinogen-induced preneoplastic hepatic
I Silins1, N Finnberg, A Ståhl
1Occupational Toxicology Group, Institute of Environmental Medicine, Karolinska Institutet, S-171 77 Stockholm, Sweden.
Abstract:
In previous studies we have demonstrated that the p53 response to DNA damage in preneoplastic liver lesions, referred to as enzyme-altered foci (EAF), is attenuated. In the present investigation comparative quantitative RT-PCR revealed no major difference in the p53 mRNA levels in EAF and non-EAF tissue. When CoCl(2) was employed to induce hypoxia-inducible factor (HIF-1alpha), both non-EAF and EAF hepatocytes readily accumulated p53, whereas EAF hepatocytes did not accumulate p53 upon treatment with diethylnitrosamine (DEN). The p53 response was also induced in EAF hepatocytes by the inhibitor of nuclear export, leptomycin B. An inhibitor of DNA-dependent protein kinase (DNA-PK) and ataxia telangiectasia mutated (ATM), wortmannin, blocked the DEN-induced p53 response in non-EAF hepatocytes. Assay of kinase activity in immunoprecipitated material from EAF and non-EAF tissue revealed attenuated ATM activity in EAF. Immunohistological and western blot analysis of the level of ATM protein was in agreement with the activity measurements and no phosphorylation of Ser15 in p53 was detected in EAF tissue 24 h after a challenging dose of DEN. Taken together with previously published data, these data indicate selective attenuation of the DNA damage pathway in EAF hepatocytes. Down-regulation of DNA damage-induced and ATM-mediated phosphorylation of p53 may confer a growth advantage on EAF hepatocytes.
Insights
The p53 response to DNA damage is weakened in preneoplastic liver lesions (EAF). This attenuation, particularly of ATM-mediated phosphorylation, may promote EAF cell growth.
Area of Science:
- Molecular Biology
- Hepatocarcinogenesis
- DNA Damage Response
Background:
- Previous studies indicated an attenuated p53 response to DNA damage in enzyme-altered foci (EAF).
- The p53 protein is a critical tumor suppressor involved in DNA damage response.
- EAFs are preneoplastic lesions in the liver that can progress to cancer.
Purpose of the Study:
- To investigate the molecular mechanisms underlying the attenuated p53 response in EAF.
- To compare p53 mRNA levels and its activation pathways in EAF versus non-EAF liver tissue.
- To determine if the DNA damage response pathway, specifically ATM kinase, is altered in EAF.
Main Methods:
- Comparative quantitative RT-PCR to measure p53 mRNA levels.
- Treatment with CoCl2 to induce hypoxia-inducible factor (HIF-1alpha).
- Treatment with diethylnitrosamine (DEN) to induce DNA damage.
- Treatment with leptomycin B (nuclear export inhibitor) and wortmannin (DNA-PK/ATM inhibitor).
- Assay of kinase activity, immunohistological analysis, and Western blotting for ATM and p53 phosphorylation.
Main Results:
- No significant difference in p53 mRNA levels between EAF and non-EAF tissue.
- EAF hepatocytes failed to accumulate p53 upon DEN treatment, unlike non-EAF cells.
- Attenuated ATM kinase activity and lack of Ser15 p53 phosphorylation were observed in EAF tissue after DEN challenge.
- Wortmannin blocked DEN-induced p53 response in non-EAF cells, highlighting the role of ATM/DNA-PK.
Conclusions:
- Selective attenuation of the DNA damage response pathway, particularly ATM-mediated p53 phosphorylation, occurs in EAF hepatocytes.
- This down-regulation of DNA damage signaling may provide a growth advantage to EAF cells, contributing to hepatocarcinogenesis.
- The findings elucidate a key mechanism in early liver lesion development and potential therapeutic targets.
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