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ExInt: an Exon Intron Database.

M Sakharkar1, F Passetti, J E de Souza

  • 1Ludwig Institute for Cancer Research, Sao Paulo Branch, Rua Prof. Antonio Prudente 109, 01509-010, Sao Paulo, Brazil.

Nucleic Acids Research
|December 26, 2001
PubMed
Summary
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The Exon/Intron Database (ExInt) now offers enhanced data retrieval for eukaryotic intron sequences. This update improves access to comprehensive genetic information for researchers studying gene structure and function.

Area of Science:

  • Bioinformatics
  • Genomics
  • Molecular Biology

Background:

  • The Exon/Intron Database (ExInt) is a crucial resource for eukaryotic intron sequences.
  • Access to genetic data is vital for understanding gene structure and function.

Purpose of the Study:

  • To report on recent implementations and improvements to the Exon/Intron Database (ExInt).
  • To enhance data accessibility and retrieval for eukaryotic intron sequences.

Main Methods:

  • Data curation and annotation of eukaryotic intron sequences from GenBank.
  • Development of a retrieval system for accessing ExInt data.
  • Provision of data as flat-files and a MySQL dump file.

Main Results:

Related Experiment Videos

  • ExInt provides comprehensive information on annotated intron sequences from GenBank.
  • Multiple data access methods are available, including a retrieval system, flat-files, and MySQL dumps.
  • The database is accessible online at http://intron.bic.nus.edu.sg/exint/newexint/exint.html.

    • Conclusions:

    • The ExInt database serves as a valuable, updated resource for genomic research.
    • Enhanced implementations facilitate easier access to critical intron sequence data.
    • Continued development ensures ExInt remains a key tool for bioinformatics and molecular biology studies.