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Updated: Jul 30, 2026

From a Natural Product to Its Biosynthetic Gene Cluster: A Demonstration Using Polyketomycin from Streptomyces diastatochromogenes Tü6028
Published on: January 13, 2017
Chain initiation on the soraphen-producing modular polyketide synthase from Sorangium cellulosum
C J Wilkinson1, E J Frost, J Staunton
1Cambridge Centre for Molecular Recognition and Department of Biochemistry, University of Cambridge, UK.
Researchers engineered hybrid polyketide synthases (PKSs) to incorporate benzoate starter units, demonstrating that specific enzyme domains can confer this ability. Successful synthesis requires providing benzoyl-CoA precursor within the host cell.
Area of Science:
- Biochemistry
- Molecular Biology
- Synthetic Biology
Background:
- Polyketides are diverse natural products synthesized by bacterial modular polyketide synthases (PKSs).
- PKSs utilize specific loading modules to select starter units for polyketide chain extension.
- The soraphen PKS employs an unusual loading module specifying a benzoic acid starter unit.
Purpose of the Study:
- To investigate the functional transfer of the soraphen PKS loading module's starter unit specificity to other PKSs.
- To test the understanding of PKS domain interactions and substrate recruitment in hybrid enzyme construction.
Main Methods:
- Construction of hybrid PKSs by substituting domains from the soraphen PKS into the DEBS1-TE scaffold.
- Analysis of product formation from hybrid PKSs, including engineered acyltransferase (AT) domains and loading modules.
- Manipulation of intracellular benzoyl-CoA levels in the host strain (Saccharopolyspora erythraea).
Main Results:
- Hybrid PKSs with soraphen AT domains successfully produced triketide lactones with altered structures.
- Incorporation of the soraphen loading module led to 5-phenyl-substituted triketide lactone production.
- Production of phenyl-substituted lactones was dependent on increased intracellular benzoyl-CoA supply.
Conclusions:
- The ability to recruit a benzoate starter unit can be conferred by transferring specific AT domains or modules from the soraphen PKS.
- Successful benzoate incorporation into hybrid PKS products necessitates the availability of benzoyl-CoA precursor.
- Engineering hybrid actinomycete-myxobacterial PKSs expands the synthetic capabilities of these enzymes.
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