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Updated: Aug 13, 2026

Isolation of Cognate RNA-protein Complexes from Cells Using Oligonucleotide-directed Elution
Published on: January 16, 2017
A conserved role of a DEAD box helicase in mRNA masking
N Minshall1, G Thom, N Standart
1Department of Biochemistry, University of Cambridge, United Kingdom.
Abstract:
Clam p82 is a member of the cytoplasmic polyadenylation element-binding protein (CPEB) family of RNA-binding proteins and serves dual functions in regulating gene expression in early development. In the oocyte, p82/CPEB is a translational repressor, whereas in the activated egg, it acts as a polyadenylation factor. Coimmunoprecipitations were performed with p82 antibodies in clam oocyte and egg lysates to identify stage-regulated accessory factors. p47 coprecipitates with p82 from oocyte lysates in an RNA-dependent manner and is absent from egg lysate p92-bound material. Clam p47 is a member of the RCK/p54 family of DEAD box RNA helicases. Xp54, the Xenopus homolog, with bona fide helicase activity, is an abundant and integral component of stored mRNP in oocytes (Ladomery et al., 1997). In oocytes, clam p47 and p82/CPEB are found in large cytoplasmic mRNP complexes. Whereas the helicase level is constant during embryogenesis, in contrast to CPEB, clam p47 translocates to nuclei at the two-cell stage. To address the role of this class of helicase in masking, Xp54 was tethered via 3' UTR MS2-binding sites to firefly luciferase, following microinjection of fusion protein and nonadenylated reporter mRNAs into Xenopus oocytes. Tethered helicase repressed luciferase translation three- to fivefold and, strikingly, mutations in two helicase motifs (DEAD--> DQAD and HRIGR-->HRIGQ), activated translation three- to fourfold, relative to MS2. These data suggest that this helicase family represses translation of maternal mRNA in early development, and that its activity may be attenuated during meiotic maturation, prior to cytoplasmic polyadenylation.
Insights
Clam p47, a DEAD box RNA helicase, represses translation of maternal mRNA during early development. Its activity is regulated during meiotic maturation, prior to cytoplasmic polyadenylation, suggesting a role in translational control.
Area of Science:
- Molecular Biology
- Developmental Biology
- RNA Biology
Background:
- Clam p82/cytoplasmic polyadenylation element-binding protein (CPEB) has dual roles: translational repressor in oocytes and polyadenylation factor in eggs.
- p82/CPEB regulates gene expression during early development.
- Accessory factors binding to p82/CPEB were investigated to understand stage-specific regulation.
Purpose of the Study:
- To identify stage-regulated accessory factors interacting with clam p82/CPEB.
- To investigate the role of clam p47, a DEAD box RNA helicase, in translational repression during early development.
- To determine if the helicase activity of p47 family members is essential for translational repression.
Main Methods:
- Coimmunoprecipitation of p82/CPEB from clam oocyte and egg lysates.
- Analysis of p47 localization during embryogenesis.
- Microinjection of reporter mRNA and fusion proteins into Xenopus oocytes.
- Site-directed mutagenesis of helicase motifs in Xp54.
Main Results:
- Clam p47 RNA helicase coprecipitates with p82/CPEB in oocytes but not in eggs.
- p47 is found in large cytoplasmic mRNP complexes in oocytes and translocates to the nucleus at the two-cell stage.
- Tethered Xp54 helicase repressed luciferase translation; mutations in helicase motifs abolished repression and activated translation.
Conclusions:
- Clam p47 functions as a translational repressor of maternal mRNA in early development.
- The helicase activity of p47 family members is crucial for translational repression.
- Helicase activity may be attenuated during meiotic maturation, preceding cytoplasmic polyadenylation.
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