Physical and functional interaction between the mini-chromosome maintenance-like DNA helicase and the single-stranded

Floriana Carpentieri1, Mariarita De Felice, Mariarosaria De Falco

  • 1Istituto di Biochimica delle Proteine, Consiglio Nazionale delle Ricerche, Via P. Castellino 111, Napoli 80131, Italy.

Insights

This study characterizes the Sulfolobus solfataricus Mini-chromosome Maintenance (Sso MCM) protein, revealing its DNA helicase activity and interaction with Sso SSB protein. These findings suggest a collaborative role in DNA replication pathways.

Area of Science:

  • Molecular Biology
  • Biochemistry
  • Genetics

Background:

  • Mini-chromosome Maintenance (MCM) proteins are crucial for DNA replication initiation and elongation in eukaryotes.
  • MCM homologs are found in Archaea, with Mth MCM exhibiting ATP-dependent DNA helicase activity.

Purpose of the Study:

  • To biochemically characterize the MCM homolog from the crenarchaeon Sulfolobus solfataricus (Sso MCM).
  • To investigate the oligomeric state, enzymatic activities, and interactions of Sso MCM.

Main Methods:

  • Gel filtration and glycerol gradient centrifugation to determine oligomeric state.
  • In vitro assays to assess NTPase and DNA helicase activity.
  • Immunological methods to detect protein-protein interactions.

Main Results:

  • Sso MCM forms single hexamers, unlike the double hexamers of Mth MCM.
  • Sso MCM exhibits NTPase and DNA helicase activity, preferring DNA with a 5'-tail.
  • Sso MCM activity is stimulated by Sso single-stranded DNA binding protein (SSB), with which it forms complexes.

Conclusions:

  • This is the first in vitro biochemical evidence of a physical and functional interaction between a MCM complex and another replication factor.
  • Sso MCM and Sso SSB likely function together in vivo within DNA metabolic pathways.

Related Concept Videos

Single-Strand DNA Binding Proteins01:03

Single-Strand DNA Binding Proteins

For successful DNA replication, the unwinding of double-stranded DNA must be accompanied by stabilization and protection of the separated single strands of the DNA. This crucial task is performed by single-strand DNA-binding (SSB) proteins. They bind to the DNA in a sequence-independent manner, which means that the nitrogenous bases of the DNA need not be present in a specific order for binding of SSB proteins to it. The binding of SSB proteins straightens single-stranded DNA (ssDNA) and makes...
DNA Helicases00:55

DNA Helicases

DNA unwinding helicase enzymes are a type of motor protein. Motor proteins can translocate along filaments or polymers using energy generated from ATP hydrolysis. Helicases are involved in all the important cellular processes where DNA unwinding is required, such as DNA replication, repair, recombination, and transcription. They are present in all living organisms, but vary in their structure, function, and mechanism of action. For example, in prokaryotes, DnaB helicase binds and translocates...
Nucleoid01:24

Nucleoid

The nucleoid represents a structurally and functionally distinct region within prokaryotic cells, where the cell's DNA and associated proteins are housed. Unlike eukaryotic cells, prokaryotes lack a membrane-bound nucleus, and the nucleoid facilitates the organization and accessibility of the genetic material within this constraint. The DNA in most bacteria and archaea exists as a single, circular, double-stranded molecule that is highly compacted through supercoiling and interactions with...
The Replisome03:01

The Replisome

DNA replication is carried out by a large complex of proteins that act in a coordinated matter to achieve high-fidelity DNA replication. Together this complex is known as the DNA replication machinery or the replisome.
The synthesis of the leading and lagging strands is a highly coordinated process. To explain this, the “Trombone model” was proposed by Bruce Alberts in 1980. The DNA loop formation starts when a primer is synthesized on the parent lagging strand. The loop grows with the...
Homologous Recombination02:31

Homologous Recombination

The basic reaction of homologous recombination (HR) involves two chromatids that contain DNA sequences sharing a significant stretch of identity. One of these sequences uses a strand from another as a template to synthesize DNA in an enzyme-catalyzed reaction. The final product is a novel amalgamation of the two substrates. To ensure an accurate recombination of sequences, HR is restricted to the S and G2 phases of the cell cycle. At these stages, the DNA has been replicated already and the...
Restarting Stalled Replication Forks02:37

Restarting Stalled Replication Forks

DNA replication is initiated at sites containing predefined DNA sequences known as origins of replication. DNA is unwound at these sites by the minichromosome maintenance (MCM) helicase and other factors such as Cdc45 and the associated GINS complex.The unwound single strands are protected by replication protein A (RPA) until DNA polymerase starts synthesizing DNA at the 5’ end of the strand in the same direction as the replication fork. To prevent the replication fork from falling apart, a...