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Updated: Aug 26, 2026

Characterizing DNA Repair Processes at Transient and Long-lasting Double-strand DNA Breaks by Immunofluorescence Microscopy
Published on: June 8, 2018
The DNA damage-dependent intra-S phase checkpoint is regulated by parallel pathways
Jacob Falck1, John H J Petrini, Bret R Williams
1Institute of Cancer Biology, Danish Cancer Society, Strandboulevarden 49, DK-2100 Copenhagen, Denmark.
Abstract:
To preserve genetic integrity, mammalian cells exposed to ionizing radiation activate the ATM kinase, which initiates a complex response-including the S-phase checkpoint pathways-to delay DNA replication. Defects in ATM or its substrates Nbs1 or Chk2 (ref. 3), the Nbs1-interacting Mre11 protein, or the Chk2-regulated Cdc25A-Cdk2 cascade all cause radio-resistant DNA synthesis (RDS). It is unknown, however, whether these proteins operate in a common signaling cascade. Here we show that experimental blockade of either the Nbs1-Mre11 function or the Chk2-triggered events leads to a partial RDS phenotype in human cells. In contrast, concomitant interference with Nbs1-Mre11 and the Chk2-Cdc25A-Cdk2 pathways entirely abolishes inhibition of DNA synthesis induced by ionizing radiation, resulting in complete RDS analogous to that caused by defective ATM. In addition, Cdk2-dependent loading of Cdc45 onto replication origins, a prerequisite for recruitment of DNA polymerase, was prevented upon irradiation of normal or Nbs1/Mre11-defective cells but not cells with defective ATM. We conclude that in response to ionizing radiation, phosphorylations of Nbs1 and Chk2 by ATM trigger two parallel branches of the DNA damage-dependent S-phase checkpoint that cooperate by inhibiting distinct steps of DNA replication.
Insights
Ionizing radiation triggers DNA damage checkpoints via ATM kinase. Blocking Nbs1-Mre11 and Chk2-Cdc25A-Cdk2 pathways together completely halts DNA replication inhibition, revealing parallel DNA repair pathways.
Area of Science:
- Cellular biology
- Molecular biology
- Genetics
Background:
- Mammalian cells activate ATM kinase in response to ionizing radiation to preserve genetic integrity.
- This activation initiates S-phase checkpoint pathways to delay DNA replication.
- Defects in ATM, Nbs1, Chk2, Mre11, or Cdc25A-Cdk2 lead to radio-resistant DNA synthesis (RDS).
Purpose of the Study:
- To investigate whether Nbs1, Chk2, and associated proteins function in a common signaling cascade.
- To elucidate the cooperative mechanisms of DNA damage-dependent S-phase checkpoint pathways.
Main Methods:
- Experimental blockade of Nbs1-Mre11 function in human cells.
- Interference with Chk2-triggered events and the Chk2-Cdc25A-Cdk2 cascade.
- Assessment of DNA synthesis inhibition and radio-resistant DNA synthesis (RDS) phenotype.
- Analysis of Cdk2-dependent loading of Cdc45 onto replication origins.
Main Results:
- Blocking Nbs1-Mre11 or Chk2-Cdc25A-Cdk2 pathways individually resulted in a partial RDS phenotype.
- Concomitant interference with both pathways completely abolished DNA synthesis inhibition by ionizing radiation, causing complete RDS.
- Irradiation prevented Cdk2-dependent Cdc45 loading in normal and Nbs1/Mre11-defective cells, but not in ATM-defective cells.
Conclusions:
- ATM kinase phosphorylates Nbs1 and Chk2, initiating two parallel branches of the DNA damage-dependent S-phase checkpoint.
- These parallel pathways cooperate to inhibit distinct steps in DNA replication following ionizing radiation exposure.
- Understanding these pathways is crucial for comprehending cellular responses to DNA damage.
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