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Updated: Jul 13, 2026

PIP-on-a-chip: A Label-free Study of Protein-phosphoinositide Interactions
Published on: July 27, 2017
Cation-pi interactions: an energy decomposition analysis and its implication in delta-opioid receptor-ligand binding
Yirong Mo1, Govindan Subramanian, Jiali Gao
1Department of Chemistry, Department of Medicinal Chemistry, and Minnesota Supercomputer Institute, University of Minnesota, Minneapolis, Minnesota 55455, USA. ymo@xencor.com
Abstract:
The nature and strength of the cation-pi interaction in protein-ligand binding are modeled by considering a series of nonbonded complexes involving N-substituted piperidines and substituted monocylic aromatics that mimic the delta-opioid receptor-ligand binding. High-level ab initio quantum mechanical calculations confirm the importance of such cation-pi interactions, whose intermolecular interaction energy ranges from -6 to -12 kcal/mol. A better understanding of the electrostatics, polarization, and other intermolecular interactions is obtained by appropriately decomposing the total interaction energy into their individual components. The energy decomposition analysis is also useful for parametrizing existing molecular mechanics force fields that could then account for energetic contributions arising out of cation-pi interactions in biomolecules. The present results further provide a framework for interpreting experimental results from point mutation reported for the delta-opioid receptor.
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