Related Experiment Video
Updated: Oct 1, 2026

Isolation and Identification of Waterborne Antibiotic-Resistant Bacteria and Molecular Characterization of their Antibiotic Resistance Genes
Published on: March 3, 2023
Control-group selection importance in studies of antimicrobial resistance: examples applied to Pseudomonas
Anthony D Harris1, Matthew H Samore, Marc Lipsitch
1Department of Epidemiology and Preventive Medicine, University of Maryland School of Medicine, and VA Maryland Health Care System, Baltimore, MD, USA. aharris@epi.umaryland.edu
Abstract:
We aimed to illustrate the importance of control-group selection on the results of risk factor analysis for (1) imipenem-resistant Pseudomonas aeruginosa, (2) vancomycin-resistant enterococci (VRE), and (3) ampicillin-sulbactam-resistant Escherichia coli. Case patients were compared with 2 different control groups: patients with the susceptible form of the organism (type 1), and control patients among whom the case patients arose during the same period as the case patients (type 2). Comparison of case patients who had imipenem-resistant P. aeruginosa with type-1 control patients identified use of imipenem (odds ratio [OR], 27.1) and quinolones (OR, 3.25) as a risk factor for selection of antimicrobial resistance, and comparison of the same case patients with type-2 control patients identified imipenem (OR, 6.34). When case patients with VRE were compared with type-1 and with type-2 control patients, use of vancomycin was identified as a risk factor (OR, 4.38 and 2.77, respectively). Comparison of case patients who had ampicillin-sulbactam-resistant E. coli compared with type-1 control patients identified ampicillin-sulbactam (OR, 2.71) and quinolones (OR, 2.72), and comparison with type-2 control patients identified ampicillin-sulbactam (OR, 1.68). The selection of control patients from the potentially suboptimal control type 1 can falsely identify certain antibiotics and overestimate the OR of the resistance-defining antibiotic.
Insights
Choosing the right control group is crucial for accurate antimicrobial resistance risk factor analysis. Suboptimal control groups can lead to overestimated antibiotic risk, impacting treatment strategies.
Area of Science:
- Medical Microbiology
- Infectious Diseases
- Clinical Epidemiology
Background:
- Antimicrobial resistance is a growing global health threat.
- Accurate identification of risk factors is essential for effective control strategies.
- Control-group selection significantly influences the outcomes of risk factor analyses.
Purpose of the Study:
- To evaluate the impact of different control-group selection methods on risk factor analysis for specific resistant organisms.
- To compare the results obtained using two distinct control groups for imipenem-resistant Pseudomonas aeruginosa, vancomycin-resistant enterococci (VRE), and ampicillin-sulbactam-resistant Escherichia coli.
Main Methods:
- Case-control study design.
- Two types of control groups were used: Type 1 (patients with susceptible organisms) and Type 2 (patients from whom cases arose).
- Risk factors for specific resistant infections were analyzed by comparing case patients with each control group.
Main Results:
- Comparison with Type 1 controls identified different risk factors and odds ratios (ORs) compared to Type 2 controls for imipenem-resistant P. aeruginosa and ampicillin-sulbactam-resistant E. coli.
- For VRE, vancomycin use was identified as a risk factor regardless of the control group, though ORs differed.
- Type 1 controls tended to overestimate the OR for the resistance-defining antibiotic.
Conclusions:
- The choice of control group critically affects the identification and magnitude of antibiotic risk factors for antimicrobial resistance.
- Using susceptible organisms as controls (Type 1) may lead to inaccurate conclusions and overestimation of antibiotic-associated resistance.
- Careful consideration of control-group selection is vital for reliable risk factor analysis in antimicrobial resistance research.
Related Concept Videos
Antibiotic Selection
Controls in Experiments
Antimicrobial Effectiveness
Clinical Significance of Antibiotic Resistance
Gene Regulation in Microbial Communities: Quorum Sensing
Microbiota Modulation by Antibiotics

