Redox state of tumor suppressor p53 regulates its sequence-specific DNA binding in DNA-damaged cells by cysteine 277
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Published on: December 30, 2025
Jiri Buzek1, Leena Latonen, Sari Kurki
1Department of Virology, Haartman Institute, and Molecular Cancer Biology Program, Biomedicum Helsinki, University of Helsinki and Helsinki University Central Hospital Laboratory Diagnostics, PO Box 63, FIN-00014 Helsinki, Finland.
Abstract:
Using a bio-oligo pull-down DNA-binding assay we investigated the binding capacity of endogenous, DNA damage-induced p53 in human diploid fibroblasts to several p53-responsive elements (REs) present in p53-regulated genes. During the course of p53 accumulation, we observed a decrease in p53 binding to the GADD45 but not to the p21(WAF1/CIP1) RE. Using mutated GADD45 sequences we show that this change is dependent on the presence of cytosines at position 3 in RE pentamers and on the p53 redox state. Site-directed mutagenesis experiments demonstrated that Cys277 (a residue directly contacting base 3 in a RE pentamer) is critical for differential regulation of GADD45 in DNA-damaged cells. These data represent a novel mechanism for differential affinity of p53 to distinct REs.
Insights
DNA damage induces p53 accumulation, altering its binding to specific DNA elements. This study reveals a novel mechanism of differential p53 binding affinity to distinct responsive elements, crucial for gene regulation.
Area of Science:
- Molecular Biology
- Genetics
- Biochemistry
Background:
- The tumor suppressor protein p53 plays a critical role in cellular responses to DNA damage.
- p53 regulates the expression of numerous genes involved in cell cycle arrest, apoptosis, and DNA repair.
- The binding of p53 to specific DNA sequences, known as p53-responsive elements (REs), is essential for its transcriptional activity.
Purpose of the Study:
- To investigate the binding capacity of DNA damage-induced p53 to various p53-REs in human diploid fibroblasts.
- To elucidate the mechanism underlying differential p53 binding affinity to distinct REs.
Main Methods:
- Bio-oligo pull-down DNA-binding assay.
- Analysis of p53 binding to GADD45 and p21(WAF1/CIP1) REs during p53 accumulation.
- Site-directed mutagenesis of GADD45 RE sequences and p53 Cys277.
Main Results:
- p53 binding affinity decreased for the GADD45 RE but remained unchanged for the p21(WAF1/CIP1) RE during p53 accumulation.
- Differential binding to the GADD45 RE was dependent on cytosines at position 3 of RE pentamers and the p53 redox state.
- Cys277 in p53 was identified as critical for the differential regulation of GADD45 in DNA-damaged cells.
Conclusions:
- A novel mechanism for differential p53 binding affinity to distinct REs was uncovered.
- The redox state of p53 and specific DNA sequence features modulate p53's transcriptional regulation in response to DNA damage.
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