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Tick Microbiome Characterization by Next-Generation 16S rRNA Amplicon Sequencing
Published on: August 25, 2018
Genetic identification of rickettsiae isolated from ticks in Japan
Pierre-Edouard Fournier1, Hiromi Fujita, Nobuhiro Takada
1Unité des Rickettsies, Faculté de Médecine, CNRS UMR 6020 27, Université de la Méditerranée, 13385 Marseille, Cedex 05, France.
Abstract:
Following the description in Japan of Japanese spotted fever, caused by Rickettsia japonica, a search for the vector of this disease led to the isolation of several rickettsiae from various tick species. Sixty-three rickettsial isolates were obtained from six different tick species, and six type strains were described by PCR and monoclonal antibody testing. We identified these six strains by amplification and sequencing of the genes encoding 16S rRNA and citrate synthase. We confirmed that the isolates from Dermacentor taiwanensis and Haemaphysalis flava ticks were R. japonica isolates. In Ixodes ovatus, Ixodes persulcatus, and Ixodes monospinosus, we identified a Rickettsia identical or closely related to Rickettsia helvetica, a species that is pathogenic for humans and that to date has only been found in Europe. Finally, we identified a new genotype of unknown pathogenicity, genotype AT, that was isolated from Amblyomma testudinarium ticks and that is closely related to a Slovakian genotype obtained from Ixodes ricinus ticks.
Insights
Researchers identified Rickettsia bacteria in ticks following Japanese spotted fever discovery. New Rickettsia helvetica strains and an unknown genotype were found, expanding knowledge of tick-borne diseases.
Area of Science:
- Microbiology
- Veterinary Entomology
- Molecular Biology
Background:
- Japanese spotted fever, caused by Rickettsia japonica, was described in Japan.
- The need to identify the disease vector prompted further investigation into tick-borne rickettsiae.
Purpose of the Study:
- To identify and characterize rickettsial species and genotypes present in various tick populations in Japan.
- To determine the relationship of these isolates to known Rickettsia species, including R. japonica and R. helvetica.
Main Methods:
- Isolation and cultivation of rickettsial strains from collected ticks.
- Polymerase chain reaction (PCR) and monoclonal antibody testing for initial characterization.
- Gene amplification and sequencing of 16S rRNA and citrate synthase genes for precise identification.
Main Results:
- Sixty-three rickettsial isolates were obtained from six tick species.
- Isolates from Dermacentor taiwanensis and Haemaphysalis flava were confirmed as Rickettsia japonica.
- Rickettsia closely related to Rickettsia helvetica were identified in Ixodes ovatus, Ixodes persulcatus, and Ixodes monospinosus.
- A novel genotype, genotype AT, closely related to a Slovakian genotype, was isolated from Amblyomma testudinarium.
Conclusions:
- The study identified Rickettsia japonica in specific tick vectors in Japan.
- The presence of Rickettsia closely related to Rickettsia helvetica in Japanese ticks suggests potential broader geographic distribution or introduction.
- A new Rickettsia genotype of unknown pathogenicity was discovered, highlighting the diversity of tick-borne agents.
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