Related Experiment Video
Updated: Feb 6, 2026

Author Spotlight: Characterizing DNA G-Quadruplex by Bis-3-Chloropiperidine Based Chemical Mapping
Published on: May 12, 2023
Nucleophilic addition reaction in coordinated non-linear pseudohalides: experimental charge density analysis in
Jozef Kozísek1, Niels K Hansen, Hartmut Fuess
1Department of Physical Chemistry, Slovak Technical University, Radlinského 9, 812 37 Bratislava, Slovakia. kozisek@cvt.stuba.sk
Abstract:
The experimental crystal charge density of the complex [Cu(iz)(2)(can)(2)] (I) (where iz = imidazole, can = cyanamidonitrate anion), [Cu(C(3)H(4)N(2))(2)(CN(3)O(2))(2)], crystallizing in centrosymmetric space group P2(1)/c, has been determined at 120.0 (2) K, using Hansen and Coppens' aspherical atom multipole model. The central Cu atom is pseudo-octahedrally coordinated by four N atoms in an equatorial plane [two from iz molecules, 1.9660 (4) A, two from can anions, 2.0273 (5) A] and by two O atoms (from two adjacent molecules) in axial positions [2.5566 (5) A]. The d-orbital population analysis shows that the oxidation state for the copper is +2 with the d(9) configuration and that there is a hole in the d(x(2) - y(2)) orbital, located in the plane of the four nitrogen-ligating atoms. Electron lone pairs of these four N atoms are pointing into these regions of depleted electron density. In accordance with the medium-length Cu-O axial bonds, the d(z(2)) orbital is almost fully occupied [1.79 (3) electrons]. The non-bonding d(xy) orbital is fully occupied [2.05 (3) electrons]. Analysis of the atomic charges does indicate a deficit of +0.35 (4) e(-) on the nitrile carbon, which provides evidence of beta-carbon activation for a possible nucleophilic addition reaction. This reaction has been indirectly confirmed experimentally.
More Related Videos
11:44Mizoroki-Heck Cross-coupling Reactions Catalyzed by Dichloro{bis[1,1',1''-phosphinetriyltripiperidine]}palladium Under Mild Reaction Conditions
Published on: March 20, 2014
11:42Solid Phase Synthesis of a Functionalized Bis-Peptide Using "Safety Catch" Methodology
Published on: May 15, 2012
Related Concept Videos
Coordination Compounds and Nomenclature
Nucleophilic Addition to the Carbonyl Group: General Mechanism
A stronger nucleophile can directly attack the electrophilic center, the carbonyl carbon. The HOMO orbital of the nucleophile interacts with the LUMO (π* antibonding) orbital present on the carbonyl carbon. This interaction breaks the π bond and shifts the π...
Nucleophilic Aromatic Substitution: Addition–Elimination (SNAr)
The reaction begins with an attack of the nucleophile on the carbon that holds the leaving group. This results in the delocalization of the π electrons over the ring carbons. The resonance interaction between...
Coordination Number and Geometry
Nucleophilic Substitution Reactions
In 1896, the German chemist Paul Walden discovered that he could interconvert pure enantiomeric (+) and (-) malic acids through a series of reactions. This conversion suggested the involvement of optical inversion during the substitution reaction. Further, in 1930, Sir Christopher Ingold described for the first time two different forms of nucleophilic substitution reactions, which are known as SN1 (nucleophilic substitution unimolecular) and SN2 (nucleophilic substitution...
Nucleophilic Aromatic Substitution: Elimination–Addition