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Updated: Sep 30, 2026

A Reporter Assay to Analyze Intronic microRNA Maturation in Mammalian Cells
Published on: June 16, 2022
Generation of multiple mRNA transcripts from the novel human apoptosis-inducing gene hap by alternative
Xiaoling Qu1, Yipeng Qi, Bing Qi
1Institute of Virology, College of Life Sciences, Wuhan University, Wuhan 430072, People's Republic of China.
Abstract:
hap, a novel human apoptosis-inducing gene, was identified to have two major mRNA species of 1.8 and 2.7 kb in length by Northern blot analysis of poly(A)(+) RNA from multiple human tissues. The two hap transcripts derive from the alternative polyadenylation site selection: an AATAAA signal at position 1528-1533 nt for the 1.8 kb mRNA, and an AATAAA signal at position 2375-2380 nt for the 2.7 kb mRNA. The 3'-UTR spanning the region between the second and the third polyadenylation site of 2.7 kb hap was demonstrated to exert a translational activation function for hap itself and the reporter gene chloramphenicol acetyltransferase (CAT) expression by approximately threefold, despite no differences observed in the steady-state level of relative cytoplasmic mRNA. Comparing the mRNA stability of two hap transcripts indicated that the longer mRNA was not more stable than the short one. Taken together, all these data provide evidence that the hap 3'-UTR containing within the second and the third polyadenylation signal can regulate gene translation rather than transcription and mRNA stability.
Insights
The human apoptosis-inducing gene, hap, has two mRNA variants generated by alternative polyadenylation. Its 3'-UTR enhances gene translation, not mRNA stability or transcription.
Area of Science:
- Molecular Biology
- Gene Regulation
Background:
- The human hap gene, involved in apoptosis, exists as two major mRNA species (1.8 and 2.7 kb).
- These transcripts arise from alternative polyadenylation site selection within the hap gene.
Purpose of the Study:
- To investigate the regulatory mechanisms controlling hap gene expression.
- To determine the functional role of the 3 -untranslated region (3 -UTR) in hap mRNA regulation.
Main Methods:
- Northern blot analysis to detect and quantify hap mRNA species.
- Reporter gene assays (chloramphenicol acetyltransferase) to assess translational activity.
- mRNA stability assays to compare transcript half-lives.
Main Results:
- Two hap mRNA transcripts (1.8 and 2.7 kb) were identified, originating from distinct polyadenylation signals.
- The 2.7 kb hap mRNA's 3 -UTR demonstrated a threefold translational activation for both hap and reporter gene expression.
- No significant differences in mRNA stability were observed between the two hap transcripts.
- Steady-state cytoplasmic mRNA levels did not differ significantly.
Conclusions:
- The 3 -UTR of the longer hap mRNA transcript plays a crucial role in translational regulation.
- Alternative polyadenylation and the 3 -UTR contribute to modulating hap gene expression at the translational level.
- Gene expression regulation by hap involves translational control rather than transcriptional or mRNA stability mechanisms.
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