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Updated: Aug 12, 2026

Chromatin Immunoprecipitation (ChIP) using Drosophila tissue
Published on: March 23, 2012
Cyp6a8 of Drosophila melanogaster: gene structure, and sequence and functional analysis of the upstream DNA
Sushmita Maitra1, Charles Price, Ranjan Ganguly
1Department of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, TN 37996, USA.
Abstract:
In Drosophila, the insecticide resistant 91-R strain is an overproducer and susceptible 91-C and ry(506) strains are the underproducers of CYP6A8 mRNA encoded by a cytochrome P450 gene, Cyp6a8. Low expression of Cyp6a8 in the underproducer strains is due to a downregulatory effect of a putative repressor locus, which is thought to be mutant in the overproducer strain. In the present investigation, organization of Cyp6a8 and promoter activity of its upstream DNA were analyzed. Cyp6a8 has two introns of which intron II is similar to the introns of other insect CYP genes with respect to its length and position. Intron I is only 36 bp long and lacks consensus splice sites. It is also in-frame with the CYP6A8 open reading frame. Therefore, inefficient splicing of intron I may produce two isoforms of CYP6A8. Analysis of Cyp6a8 upstream DNA of the overproducer 91-R strain showed that DNA sequences between -199 and -761 bp are required for the highest constitutive and barbital-induced expression of Cyp6a8. This region has six barbie boxes and binding sites for various transcription factors. Promoter activity of the -11/-761 DNA of the overproducer 91-R strain was found to be 4-fold lower in the genome of underproducer ry(506) strain, which is wild type for the putative repressor gene, than in the genome of F1 hybrids of 91-R and ry(506) strains. These results suggest that -11/-761 Cyp6a8 DNA of the 91-R strain can respond to the active repressor present in the hybrid genome and further support our previous findings that overexpression of Cyp6a8 is a result of mutation of a repressor gene rather than mutation of the cis-regulatory sequences.
Insights
Insecticide resistance in Drosophila is linked to CYP6A8 gene expression. A repressor gene mutation, not cis-regulatory changes, causes overexpression in resistant strains.
Area of Science:
- Molecular biology
- Genetics
- Biochemistry
Background:
- CYP6A8 gene expression varies between insecticide-resistant (overproducer) and susceptible (underproducer) Drosophila strains.
- Underproduction in susceptible strains is attributed to a putative repressor locus, potentially mutated in resistant strains.
Purpose of the Study:
- To analyze the organization of the Cyp6a8 gene and the promoter activity of its upstream DNA.
- To investigate the regulatory mechanisms underlying differential CYP6A8 expression in Drosophila.
Main Methods:
- Analysis of Cyp6a8 gene structure, including introns.
- Reporter gene assays to assess promoter activity of upstream DNA regions.
- Comparative analysis of promoter activity in different Drosophila genetic backgrounds.
Main Results:
- Cyp6a8 gene contains two introns; intron I is short and may lead to CYP6A8 isoforms due to inefficient splicing.
- Upstream DNA sequences (-199 to -761 bp) are crucial for high Cyp6a8 expression, containing regulatory elements like "barbie boxes".
- Promoter activity of this region was significantly lower in underproducer strains, indicating responsiveness to a repressor present in hybrids.
Conclusions:
- Overexpression of CYP6A8 in resistant Drosophila is likely due to a mutation in a repressor gene, not cis-regulatory sequence alterations.
- The identified upstream DNA region of Cyp6a8 interacts with the repressor system, influencing gene expression levels.
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