Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Videos

Emerging bioinformatics for the metabolome.

Pedro Mendes1

  • 1Virginia Bioinformatics Institute, and State University, Blacksburg 24061, USA. mendes@vt.edu

Briefings in Bioinformatics
|July 26, 2002
PubMed
Summary
This summary is machine-generated.

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Systems biology during 20 years of PLoS Computational Biology.

PLoS computational biology·2026
Same author

CuiT is a Cu importer required for metal homeostasis in <i>Salmonella enterica</i>.

Biochemistry and biophysics reports·2026
Same author

From FAIR to CURE: guidelines for computational models of biological systems.

NPJ systems biology and applications·2026
Same author

Nutrition as a missing piece in the development of youth male soccer players: a scoping review and future directions.

Biology of sport·2026
Same author

CuiT is a Cu importer required for metal homeostasis in Salmonella enterica.

bioRxiv : the preprint server for biology·2026
Same author

Assessing Potential Reservoir of Multidrug-Resistant Bacteria in the Oral Microbiota of Captive Burmese and Royal Pythons.

Life (Basel, Switzerland)·2025

Metabolomics, a field combining functional genomics and metabolite profiling, is emerging. This review highlights bioinformatics challenges in data analysis, visualization, and archival for this developing area.

Area of Science:

  • Biochemistry
  • Bioinformatics
  • Genomics

Background:

  • Metabolomics, the study of metabolite profiles in functional genomics, is an early-stage scientific discipline.
  • Pioneering studies have begun to utilize metabolite profiling technologies.

Purpose of the Study:

  • To review technologies used in metabolite profiling.
  • To focus on bioinformatics challenges including data analysis, visualization, and archival.
  • To discuss the need for specialized and generic metabolite profile databases.

Main Methods:

  • Review of existing metabolite profiling technologies.
  • Analysis of bioinformatics approaches for metabolomics data.
  • Examination of data archival and visualization strategies.

Related Experiment Videos

Main Results:

  • Metabolomics is a nascent field with significant technological and analytical hurdles.
  • There is a clear need for robust bioinformatics tools and databases for metabolomics.
  • Current bioinformatics approaches require integration of biological context and chemical details.

Conclusions:

  • Developing standardized databases for organism-specific and generic metabolite profiles is crucial.
  • Integrated data analysis and visualization methods combining biological and chemical information are most promising for advancing metabolomics.