Methylation framework of cell cycle gene inhibitors in cirrhosis and associated hepatocellular carcinoma
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Updated: Sep 30, 2026

Analysis of Combinatorial miRNA Treatments to Regulate Cell Cycle and Angiogenesis
Published on: March 30, 2019
Massimo Roncalli1, Paolo Bianchi, Barbara Bruni
1Department of Pathology and Research Laboratory, Humanitas Clinical Institute of Rozzano and University of Milan, Italy. massimo.roncalli@humaitas.it
Abstract:
One of the main regulatory pathways reported to be altered in hepatocellular carcinoma (HCC) is that of cell cycle control involving RB1 gene-related cell inhibitors. We investigated p14(ARF), p15(INK4B), p16(INK4A), p18(INK4C), and RB1 genes in a series of HCCs and associated cirrhosis with the goal of ascertaining their pattern of inactivation by gene methylation. Thirty-three HCCs, adjacent nonneoplastic cirrhotic tissues, and 6 HCC cell lines were studied. Cirrhoses (25 of 33, 76%), HCCs (31 of 33, 94%), and 3 of 6 (50%) cell lines showed 1 or more methylated genes. Cirrhoses (17 of 33, 51%) had more frequently than HCCs (11 of 33, 33%, P =.01) only 1 methylated gene. With the exception of p18(INK4C) the genes under study showed promoter methylation with frequency ranging from 82% (p16(INK4A) in HCC) to 33% and 39% (p15(INK4B) and p16(INK4A) in cirrhoses). In cases with only 1 methylated gene, p15(INK4B) in cirrhosis (8 of 17, 47%) and p16(INK4A) in HCC (10 of 11, 91%) were the more frequently altered. An optimal correlation was found between p15 and p16 gene methylation and complete protein loss in HCC detected by immunocytochemistry, whereas a partial loss of the same proteins was a feature of methylated cirrhoses. Inactivation by DNA methylation of several genes of the RB1 pathway is common to cirrhosis and HCC. An early pattern of methylatory events (1 methylated gene) is a feature of cirrhosis rather than HCC, whereas an advanced one (> or = 3 methylated genes) is characteristic of malignancy. Early methylation changes seem to involve p15(INK4B) and p16(INK4A) in cirrhosis and p16(INK4A) in HCC. In conclusion, a stepwise progression of methylating events is a feature of the sequence cirrhosis-HCC and contributes to the process of hepatic carcinogenesis with potential clinical implications.
Insights
Gene methylation inactivates cell cycle regulators in liver cancer. Early methylation occurs in cirrhosis, while advanced methylation indicates hepatocellular carcinoma (HCC), suggesting a stepwise progression in hepatic carcinogenesis.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Hepatocellular carcinoma (HCC) involves altered cell cycle control, particularly RB1 gene-related pathways.
- Investigating RB1 pathway gene methylation is crucial for understanding HCC development.
Purpose of the Study:
- To investigate the inactivation patterns of p14ARF, p15INK4B, p16INK4A, p18INK4C, and RB1 genes via methylation in HCC and cirrhosis.
- To determine if gene methylation patterns differ between cirrhosis and HCC.
Main Methods:
- Analysis of promoter methylation in p14ARF, p15INK4B, p16INK4A, p18INK4C, and RB1 genes.
- Studied 33 HCCs, adjacent cirrhotic tissues, and 6 HCC cell lines.
- Correlated gene methylation with protein loss using immunocytochemistry.
Main Results:
- Over 76% of cirrhoses and 94% of HCCs showed at least one methylated gene.
- Cirrhosis more frequently exhibited one methylated gene (51%) compared to HCC (33%).
- p16INK4A methylation was frequent in HCC (82%), while p15INK4B and p16INK4A were common in cirrhosis (33-39%).
- Gene methylation correlated with protein loss, with complete loss in HCC and partial loss in cirrhosis.
Conclusions:
- DNA methylation inactivation of RB1 pathway genes is common in both cirrhosis and HCC.
- A stepwise progression of methylation, from early events in cirrhosis to advanced events in HCC, contributes to hepatic carcinogenesis.
- Methylation patterns offer potential clinical implications for understanding cirrhosis-HCC progression.
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