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Identification of N-linked oligosaccharides of rat insulin-like growth factor binding protein-4
Dirk Chelius1, Shiaw-Lin Wu, Pavel V Bondarenko
1Thermo Finnigan, Proteomics Division, 355 River Oaks Parkway, San Jose, CA 95134, USA. dchelius@thermofinnigan.com
Abstract:
Insulin-like growth factor binding protein-4 (IGFBP-4) is, like the other five IGFBPs, a critical regulator of the activity of insulin-like growth factor (IGF)-I and IGF-II. Whereas IGFBP-1 and IGFBP-2 are not glycosylated, IGFBP-3 and IGFBP-4 are N-glycosylated and IGFBP-5 and IGFBP-6 are O-glycosylated. In this study we identified the glycosylation of IGFBP-4 using a nanoflow LC/MS/MS techniques. Although N-linked oligosaccharides are structurally diverse, their variants are well reported in the literature. Based on the molecular weight of the possible oligosaccharide moieties, we identified five different glycosylation isoforms of the protein. Identified glycans were biantennary and differ in the number of sialic acid terminal residues and/or core modification with fucose.