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Updated: Sep 30, 2026

Using RNA-sequencing to Detect Novel Splice Variants Related to Drug Resistance in In Vitro Cancer Models
Published on: December 9, 2016
Osteosarcoma cells, resistant to methotrexate due to nucleoside and nucleobase salvage, are sensitive to nucleoside
Peter D Cole1, Angela K Smith, Barton A Kamen
1Department of Pediatrics, The Cancer Institute of NJ/Robert Wood Johnson Medical School, 195 Little Albany Street, New Brunswick, NJ 08901, USA. colepd@umdnj.edu
Purpose:
To test a novel strategy for overcoming intrinsic resistance to methotrexate (MTX) in osteosarcoma (OS) due to nucleoside and nucleobase salvage (NS).
Methods:
Four OS cell lines, found to be highly resistant to MTX, were tested to determine the dominant mechanism of resistance. Sensitivity to MTX was tested in the presence of dialyzed serum or the transport inhibitor dipyridamole (DP) to confirm the contribution of NS to MTX resistance. We then investigated whether increased NS activity could be exploited using cytotoxic nucleoside analogs.
Results:
Like other cell types, OS cells are capable of circumventing inhibition of de novo nucleotide synthesis by relying on NS. MTX, at concentrations as high as 1 m M did not inhibit cell growth in culture medium supplemented with undialyzed serum. In contrast, when NS was inhibited by DP or in medium depleted of nucleosides and nucleobases, sensitivity to MTX was seen at nanomolar concentrations. In medium with dialyzed serum, thymidine and hypoxanthine provided dose-dependent protection from MTX toxicity at concentrations similar to those seen in human plasma. No evidence of other significant mechanisms of resistance were found. All four cell lines were sensitive to 3-day exposures to cytarabine (IC50 0.22 to 2.88 micro M) and vidarabine (IC50 0.09 to 0.95 micro M).
Conclusions:
Salvage of de novo nucleotide synthesis inhibition by extracellular thymidine and hypoxanthine, at physiologically relevant concentrations, contributes to resistance to MTX in OS. However, this same process may impart a collateral sensitivity to nucleoside analogs. These findings support clinical trials for patients with OS using nucleoside analogs, either alone or in combination.
Insights
Osteosarcoma (OS) cells resist methotrexate (MTX) via nucleoside and nucleobase salvage (NS). Inhibiting NS restores MTX sensitivity and reveals collateral sensitivity to nucleoside analogs, supporting clinical trials.
Area of Science:
- Oncology
- Pharmacology
- Biochemistry
Background:
- Osteosarcoma (OS) often exhibits intrinsic resistance to chemotherapy, including methotrexate (MTX).
- Nucleoside and nucleobase salvage (NS) pathways are critical for cellular nucleotide synthesis and can confer resistance to antimetabolites like MTX.
- Understanding resistance mechanisms is crucial for developing effective OS treatment strategies.
Purpose of the Study:
- To investigate a novel strategy for overcoming MTX resistance in OS by targeting NS pathways.
- To determine the dominant mechanism of MTX resistance in OS cell lines.
- To explore the potential of exploiting NS activity with cytotoxic nucleoside analogs.
Main Methods:
- Four MTX-resistant OS cell lines were utilized.
- MTX sensitivity was assessed with and without NS inhibition (using dialyzed serum or dipyridamole).
- Cytotoxicity of nucleoside analogs (cytarabine, vidarabine) was evaluated.
Main Results:
- OS cells utilize NS to circumvent MTX's inhibition of de novo nucleotide synthesis.
- MTX efficacy was significantly enhanced (nanomolar sensitivity) when NS was inhibited.
- Extracellular thymidine and hypoxanthine conferred dose-dependent protection against MTX toxicity.
- All tested cell lines showed sensitivity to cytarabine and vidarabine.
Conclusions:
- Physiologically relevant concentrations of thymidine and hypoxanthine contribute to MTX resistance in OS via NS.
- The NS pathway's activity may lead to collateral sensitivity to nucleoside analogs in OS.
- Clinical trials investigating nucleoside analogs, alone or in combination, are warranted for OS patients.
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