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Updated: Sep 30, 2026

Assessing Cellular Target Engagement by SHP2 (PTPN11) Phosphatase Inhibitors
Published on: July 17, 2020
The SH3 domain of Src can downregulate its kinase activity in the absence of the SH2 domain-pY527 interaction
Jan Brábek1, Dominik Mojzita, Marian Novotný
1Department of Physiology and Developmental Biology, Charles University, Vinicna 7, 128 00 Prague 2, Czech Republic.
Abstract:
The contact between the SH2 domain and the C-terminal tail of c-Src inhibits its kinase activity via a complex network of interactions, including the SH3 domain. We examined the role of the SH3 domain in v-Src, where the C-terminal tail is mutated and unbound. We used the v-Src variants Prague C (PRC) and Schmidt-Ruppin A (SRA), which are of low and high kinase activities, respectively, to measure phosphorylation in vitro by immunoprecipitated kinases produced in Saccharomyces cerevisiae. Swapping the regulatory domains between SRA and PRC revealed that N117D, I96T, and V124L mutations in the n-src- and RT-loops of the SH3 domain of PRC are responsible for the low kinase activity of PRC. Moreover, introducing D117N, R95W, T96I, and L124V into activated c-Src(Y527F) caused a 2.5-fold increase in its activity. The mutations in the CD linker KP249,250DG and L255A, which were shown to activate c-Src, had no effect on the activity of the "SH2-activated" Src kinases. Together our data suggest that in the "SH2-activated" forms of Src, the SH3 domain continues to influence the kinase activity via the direct contacts of the n-src- and RT-loops with the kinase N-terminal lobe.
Insights
Specific mutations in the SH3 domain of v-Src (viral sarcoma) explain its low kinase activity. These findings reveal how the SH3 domain influences Src kinase activity through direct interactions.
Area of Science:
- Molecular Biology
- Biochemistry
- Oncology
Background:
- The Src kinase family plays a critical role in cellular signaling pathways.
- The regulatory mechanisms of Src kinase activity involve interactions between its SH2, SH3, and kinase domains.
- Understanding these interactions is crucial for deciphering oncogenic transformation.
Purpose of the Study:
- To investigate the specific role of the SH3 domain in regulating the kinase activity of v-Src (viral sarcoma).
- To identify mutations within the SH3 domain responsible for the differential kinase activity observed in v-Src variants.
- To elucidate the mechanism by which the SH3 domain influences Src kinase activity in the context of SH2 domain activation.
Main Methods:
- Utilized v-Src variants Prague C (PRC) and Schmidt-Ruppin A (SRA) with differing kinase activities.
- Employed in vitro kinase assays measuring phosphorylation by immunoprecipitated kinases produced in Saccharomyces cerevisiae.
- Performed domain swapping experiments and site-directed mutagenesis to assess the impact of specific mutations on kinase activity.
Main Results:
- Identified specific mutations (N117D, I96T, V124L) in the n-src- and RT-loops of the PRC v-Src SH3 domain as responsible for its low kinase activity.
- Demonstrated that introducing corresponding mutations (D117N, R95W, T96I, L124V) into activated c-Src (carboxyl-terminal Src) significantly increased its activity by 2.5-fold.
- Showed that mutations known to activate c-Src had no effect on the activity of "SH2-activated" Src kinases, indicating a distinct regulatory mechanism.
Conclusions:
- The SH3 domain plays a significant role in modulating v-Src kinase activity.
- Specific residues within the n-src- and RT-loops of the SH3 domain are critical determinants of Src kinase potency.
- In "SH2-activated" Src forms, the SH3 domain continues to exert regulatory influence through direct interactions with the kinase N-terminal lobe.
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