Related Experiment Video
Updated: Sep 29, 2026

Assaying Proteasomal Degradation in a Cell-free System in Plants
Published on: March 26, 2014
Timing of APC/C substrate degradation is determined by fzy/fzr specificity of destruction boxes
1Department of Genetics, Silberman Institute of Life Sciences, The Hebrew University of Jerusalem, Jerusalem 91904, Israel.
Abstract:
The anaphase promoting complex/cyclosome (APC/C), activated by fzy and fzr, degrades cell cycle proteins that carry RXXL or KEN destruction boxes (d-boxes). APC/C substrates regulate sequential events and must be degraded in the correct order during mitosis and G(1). We studied how d-boxes determine APC/C(fzy)/APC/C(fzr) specificity and degradation timing. Cyclin B1 has an RXXL box and is degraded by both APC/C(fzy) and APC/C(fzr); fzy has a KEN box and is degraded by APC/C(fzr) only. We characterized the degradation of substrates with swapped d-boxes. Cyclin B1 with KEN was degraded by APC/C(fzr) only. Fzy with RXXL could be degraded by APC/C(fzy) and APC/C(fzr). Interestingly, APC/C(fzy)- but not APC/C(fzr)-specific degradation is highly dependent on the location of RXXL. We studied degradation of tagged substrates in real time and observed that APC/C(fzr) is activated in early G(1). These observations demonstrate how d-box specificities of APC/C(fzy) and APC/C(fzr), and the successive activation of APC/C by fzy and fzr, establish the temporal degradation pattern. Our observations can explain further why some endogenous RXXL substrates are degraded by APC/C(fzy), while others are restricted to APC/C(fzr).
Insights
The anaphase-promoting complex/cyclosome (APC/C) controls cell cycle timing by degrading proteins. This study reveals how destruction boxes (d-boxes) dictate APC/C specificity and degradation order, ensuring proper cell division.
Area of Science:
- Cell Biology
- Molecular Biology
- Biochemistry
Background:
- The anaphase-promoting complex/cyclosome (APC/C) is a crucial ubiquitin ligase complex regulating cell cycle progression.
- APC/C activity is tightly controlled by its co-activators, Cdc20 (encoded by fzy) and Cdh1 (encoded by fzr).
- APC/C substrates contain specific destruction motifs, RXXL or KEN boxes (d-boxes), which are recognized by the APC/C-coactivator complex.
Purpose of the Study:
- To investigate how different destruction boxes (d-boxes) confer substrate specificity to APC/C-fzy and APC/C-fzr complexes.
- To determine how d-box sequences and APC/C co-activator specificity influence the timing of substrate degradation during mitosis and G1.
- To elucidate the mechanisms underlying the ordered degradation of APC/C substrates.
Main Methods:
- Utilized in vivo degradation assays with real-time monitoring of tagged substrates.
- Employed site-directed mutagenesis to swap destruction box motifs (RXXL and KEN) in known APC/C substrates like Cyclin B1 and fzy.
- Analyzed the degradation kinetics of wild-type and mutant substrates by APC/C-fzy and APC/C-fzr complexes.
Main Results:
- Substrate degradation by APC/C-fzy and APC/C-fzr is d-box dependent, with RXXL and KEN boxes conferring distinct specificities.
- Cyclin B1 (RXXL) is degraded by both APC/C-fzy and APC/C-fzr, while fzy (KEN box) is degraded only by APC/C-fzr.
- Degradation mediated by APC/C-fzy is highly sensitive to the RXXL motif's position, whereas APC/C-fzr exhibits broader substrate acceptance.
- APC/C-fzr activation occurs in early G1, contributing to the temporal separation of degradation events.
Conclusions:
- The specificity of d-boxes for APC/C-fzy and APC/C-fzr, coupled with the sequential activation of APC/C by fzy and fzr, establishes the precise temporal degradation pattern of cell cycle proteins.
- These findings explain why certain endogenous RXXL substrates are exclusively degraded by APC/C-fzy, while others are targeted by APC/C-fzr.
- Understanding d-box specificity is critical for comprehending cell cycle control and ensuring accurate chromosome segregation and cell division.
Related Concept Videos
Anaphase Promoting Complex
Regulated Protein Degradation
Protein degradation plays two important roles in the cells. It helps to protect cells from misfolded or damaged proteins before they lead to a...
Protein Complexes with Interchangeable Parts
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order to...
The Proteasome
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. A series of enzymes carry out the ubiquitination of the target proteins - E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
The Proteasome
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. This involves participation of a series of enzymes including— E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3 (ubiquitin...
