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Updated: Aug 13, 2026

Visualization of DNA Replication in the Vertebrate Model System DT40 using the DNA Fiber Technique
Published on: October 27, 2011
DNA replication is required for the checkpoint response to damaged DNA in Xenopus egg extracts
Matthew P Stokes1, Ruth Van Hatten, Howard D Lindsay
1The Biological Laboratories, Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA. matt@mcb.harvard.edu
Abstract:
Alkylating agents, such as methyl methanesulfonate (MMS), damage DNA and activate the DNA damage checkpoint. Although many of the checkpoint proteins that transduce damage signals have been identified and characterized, the mechanism that senses the damage and activates the checkpoint is not yet understood. To address this issue for alkylation damage, we have reconstituted the checkpoint response to MMS in Xenopus egg extracts. Using four different indicators for checkpoint activation (delay on entrance into mitosis, slowing of DNA replication, phosphorylation of the Chk1 protein, and physical association of the Rad17 checkpoint protein with damaged DNA), we report that MMS-induced checkpoint activation is dependent upon entrance into S phase. Additionally, we show that the replication of damaged double-stranded DNA, and not replication of damaged single-stranded DNA, is the molecular event that activates the checkpoint. Therefore, these data provide direct evidence that replication forks are an obligate intermediate in the activation of the DNA damage checkpoint.
Insights
Methyl methanesulfonate (MMS) triggers DNA damage checkpoints, but the sensing mechanism remains unclear. This study reveals that DNA replication forks are essential for activating these crucial cellular checkpoints.
Area of Science:
- Molecular Biology
- Cellular Biology
- Genetics
Background:
- Alkylating agents like methyl methanesulfonate (MMS) induce DNA damage and activate cellular checkpoints.
- While checkpoint proteins are known, the precise mechanism of damage sensing and checkpoint activation is not fully understood.
Purpose of the Study:
- To elucidate the mechanism of DNA damage sensing and checkpoint activation in response to alkylation damage.
- To investigate the role of replication in MMS-induced checkpoint activation.
Main Methods:
- Reconstitution of the DNA damage checkpoint response to MMS in Xenopus egg extracts.
- Monitoring of four key indicators: mitotic entry delay, DNA replication slowing, Chk1 phosphorylation, and Rad17 protein association with damaged DNA.
Main Results:
- MMS-induced checkpoint activation requires entry into S phase.
- Replication of damaged double-stranded DNA, not single-stranded DNA, triggers checkpoint activation.
- Replication forks are identified as a critical intermediate in this process.
Conclusions:
- Replication forks are obligate intermediates in the activation of the DNA damage checkpoint.
- This finding clarifies a fundamental aspect of DNA damage response pathways.
Related Concept Videos
The DNA Replication Fork
DNA Damage can Stall the Cell Cycle
Restarting Stalled Replication Forks
S-Cdk Initiates DNA Replication
Two states at the origin of replication
In eukaryotes, the initiation of replication occurs at many sites on the chromosomes, called the origins of replication.
DNA Damage Can Stall the Cell Cycle
S-Cdk Initiates DNA Replication
Two states at the origin of replication
In eukaryotes, the initiation of replication occurs at many sites on the chromosomes, called the origins of replication.

