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OrthoGUI: graphical presentation of Orthostrapper results
Volker Hollich1, Christian E V Storm, Erik L L Sonnhammer
1Center for Genomics and Bioinformatics, Karolinska Institutet, SE-171 77 Stockholm, Sweden.
Bioinformatics (Oxford, England)
|September 10, 2002
Abstract
Summary:
Orthostrapper is a program that calculates orthology support values for pairs of sequences in a multiple alignment (Storm and Sonnhammer, Bioinformatics, 18, 92-99, 2002). Here we present OrthoGUI, a web interface and display tool for Orthostrapper analysis. OrthoGUI visualizes the Orthostrapper output in both tabular and tree representations, and can also apply a clustering algorithm to identify groups of multiple orthologs, which are indicated by colour coding.
Availability:
http://www.cgb.ki.se/OrthoGUI CONTACT: erik.sonnhammer@cgb.ki.se