Related Experiment Videos
Applications of Tree-Maps to hierarchical biological data
Patrick McConnell1, Kimberly Johnson, Simon Lin
1Duke Bioinformatics Shared Resource, Duke University Medical Center, Durham NC 27710, USA. mccon012@mc.duke.edu
Unlabelled:
A brief overview of Tree-Maps provides the basis for understanding two new implementations of Tree-Map methods. TreeMapClusterView provides a new way to view microarray gene expression data, and GenePlacer provides a view of gene ontology annotation data. We also discuss the benefits of Tree-Maps to visualize complex hierarchies in functional genomics.
Availability:
Java class files are freely available at http://mendel.mc.duke.edu/bioinformatics/
Contact:
mccon012@mc.duke.edu
Supplementary Information:
For more information on TreeMapClusterView (see http://mendel.mc.duke.edu/bioinformatics/software/boxclusterview/), and http://mendel.mc.duke.edu/bioinformatics/software/geneplacer/).