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Methods to Discover Alternative Promoter Usage and Transcriptional Regulation of Murine Bcrp1
Published on: May 27, 2016
The genomic organization, promoter position and expression profile of the mouse MRG15 gene
Kaoru Tominaga1, Olivia M Pereira-Smith
1Department of Cellular and Structural Biology, Sam and Ann Barshop Center for Longevity and Aging Studies, University of Texas Health Science Center at San Antonio, STCBM, 15355 Lambda Drive, San Antonio, TX 78245-3207, USA. tominaga@uthscsa.edu
Abstract:
MORF4 (mortality factor on chromosome 4) and the novel related MRG (MORF4-related gene) gene family were identified when MORF4 was shown to induce senescence in a subset of tumor cell lines. The gene on chromosome 15 (MRG15) has high similarity to Drosophila MSL3, which is a component of the dosage compensation complex. MRG15 also has a chromodomain and may therefore function as a chromatin remodeling factor in a complex(es) involving a histone acetyltransferase, similar to MSL3. To complement our studies on human MRG15, we cloned and characterized the mouse MRG15 gene. Mouse MRG15 is expressed ubiquitously in adult tissues and at various embryonic stages, and expression in adult testis is higher than in other tissues. MRG15-b, which is an alternatively spliced form of MRG15-a and has a 39-amino-acid insertion in the chromodomain, is also expressed in all mouse tissues examined and localizes to the nucleus of cells. It is possible that MRG15-b may lack the function of the chromodomain because of the additional amino acids and could potentially be the equivalent of the human MORF4 in the mouse. The mouse MRG15 gene is composed of twelve exons and spans over 24 kb DNA. Using luciferase constructs we have determined that there is a functional promoter sequence 1.8 kb upstream of the ATG start codon. This region contains no TATA box but has GC-rich regions, consistent with the ubiquitous expression we have observed.
Insights
Researchers identified the mouse MRG15 gene, a homolog of human MORF4, and found it is ubiquitously expressed. An alternatively spliced form, MRG15-b, may lack chromodomain function, potentially mirroring human MORF4 activity.
Area of Science:
- Molecular Biology
- Genetics
- Cell Biology
Background:
- The MORF4 (mortality factor on chromosome 4) gene and the related MRG (MORF4-related gene) family were identified due to MORF4's ability to induce senescence in tumor cells.
- Human MRG15 shares similarity with Drosophila MSL3, a dosage compensation complex component, suggesting a role in chromatin remodeling.
Purpose of the Study:
- To clone and characterize the mouse MRG15 gene and its splice variants.
- To investigate the expression patterns and potential functions of mouse MRG15 and its splice variants.
Main Methods:
- Gene cloning and characterization of mouse MRG15.
- Analysis of gene expression in adult and embryonic mouse tissues.
- Identification and characterization of alternatively spliced forms (MRG15-a and MRG15-b).
- Luciferase reporter assays to identify functional promoter regions.
Main Results:
- Mouse MRG15 is ubiquitously expressed in adult tissues and embryonic stages, with higher expression in adult testis.
- An alternatively spliced form, MRG15-b, containing a 39-amino-acid insertion in the chromodomain, is also ubiquitously expressed and localized to the nucleus.
- The mouse MRG15 gene spans 24 kb and has a functional promoter region 1.8 kb upstream of the start codon, characterized by GC-rich regions and absence of a TATA box.
- MRG15-b's altered chromodomain suggests it might lack functional activity, potentially acting as a mouse homolog of human MORF4.
Conclusions:
- Mouse MRG15 exhibits ubiquitous expression, indicating a fundamental role in mammalian development and physiology.
- The alternatively spliced MRG15-b variant presents a potential functional divergence from MRG15-a, possibly mirroring the role of human MORF4.
- The identified promoter elements explain the widespread expression of the mouse MRG15 gene.
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