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Genquire: genome annotation browser/editor
M D Wilkinson1, D Block, W L Crosby
1Plant Biotechnology Institute, National Research Council Canada, Saskatoon, Saskatchwan, S7N 0W9, Canada. mwilkinson@gene.pbi.nrc.ca
Unlabelled:
We present a software package, Genquire, that allows visualization, querying, hand editing, and de novo markup of complete or partially annotated genomes. The system is written in Perl/Tk and uses, where possible, existing BioPerl data models and methods for representation and manipulation of the sequence and annotation objects. An adaptor API is provided to allow Genquire to display a wide range of databases and flat files, and a plugins API provides an interface to other sequence analysis software.
Availability:
Genquire v3.03 is open-source software. The code is available for download and/or contribution at http://www.bioinformatics.org/Genquire