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Updated: Sep 28, 2026

Studying RNA Interactors of Protein Kinase RNA-Activated during the Mammalian Cell Cycle
Published on: March 5, 2019
The transcriptional activator Mirk/Dyrk1B is sequestered by p38alpha/beta MAP kinase
Seunghwan Lim1, Yonglong Zou, Eileen Friedman
1Pathology Department, Upstate Medical University, 750 East Adams Street, Syracuse, NY 13210, USA.
Abstract:
Mirk/Dyrk1B protein kinase was shown in an earlier study to function as a transcriptional activator of HNF1alpha, which Mirk phosphorylates at Ser(249) within its CREB (cAMP-response element-binding protein)-binding protein (CBP) binding domain (). The MAPK kinase MKK3 was also shown to activate Mirk as a protein kinase, implicating Mirk in the biological response to certain stress agents. Another MKK3 substrate, p38MAPK, is now shown to inhibit the function of Mirk as a transcriptional activator in a kinase-independent manner. Co-immunoprecipitation experiments demonstrated that kinase-inactive p38AF, as well as wild-type p38, sequestered Mirk and prevented its association with MKK3. Only the p38alpha and p38beta isoforms, but not the gamma or delta isoforms, complexed with Mirk. p38alphaMAPK blocked Mirk activation of HNF1alpha in a dose-dependent manner, with high levels of kinase-inactive p38alphaAF completely suppressing the activity of Mirk. Size fractionation by fast protein liquid chromatography on Superdex 200 demonstrated that Mirk is not found as a monomer in vivo, but is found within 150-700 kDa subnuclear complexes, which co-migrate with the nuclear body scaffolding protein PML. Endogenous Mirk, p38, and MKK3 co-migrate within 500-700-kDa protein complexes, which accumulate when nuclear export is blocked by leptomycin B. Stable overexpression of Mirk increases the fraction of Mirk protein and p38 protein within these 500-700 kDa complexes, suggesting that the complexes act as nuclear depots for Mirk and p38. Sequestration of Mirk by p38 may occur within these subnuclear complexes. Synchronization experiments demonstrated that Mirk levels fluctuate about 10-fold within the cell cycle, while p38 levels do not, leading to the speculation that endogenous p38 could only block Mirk function when Mirk levels were low in S phase and not when Mirk levels were elevated in G(0)/G(1). These data suggest a novel cell cycle-dependent function for p38, suppression of the function of Mirk as a transcriptional activator only when cells are proliferating, and thus limiting Mirk function to growth-arrested cells.
Insights
p38 mitogen-activated protein kinase (MAPK) inhibits Mirk/Dyrk1B protein kinase activity, a transcriptional activator, in a cell cycle-dependent manner. This suppression limits Mirk function to growth-arrested cells, not proliferating ones.
Area of Science:
- Molecular Biology
- Cell Signaling
- Gene Regulation
Background:
- Mirk/Dyrk1B protein kinase activates HNF1alpha transcription by phosphorylating it.
- Mirk activity is regulated by MAPK kinase MKK3, linking it to stress responses.
- p38MAPK is implicated in cellular stress and signaling pathways.
Purpose of the Study:
- To investigate the inhibitory role of p38MAPK on Mirk's transcriptional activation function.
- To elucidate the mechanism and cell cycle dependency of p38MAPK-mediated inhibition of Mirk.
- To understand the complex formation and localization of Mirk, p38, and MKK3.
Main Methods:
- Co-immunoprecipitation assays to study protein interactions.
- Kinase-inactive p38alphaAF mutant to assess kinase-independent effects.
- Fast protein liquid chromatography (FPLC) for size fractionation of protein complexes.
- Cell synchronization and leptomycin B treatment to study cell cycle and nuclear export.
Main Results:
- p38MAPK (alpha and beta isoforms) inhibits Mirk's activation of HNF1alpha in a kinase-independent manner.
- p38MAPK sequesters Mirk, preventing its association with MKK3 and forming stable subnuclear complexes.
- Mirk levels fluctuate during the cell cycle, while p38 levels remain constant, suggesting cell cycle-dependent regulation.
- p38MAPK suppresses Mirk function primarily during proliferation (S phase) when Mirk levels are low.
Conclusions:
- p38MAPK exerts a novel cell cycle-dependent suppression of Mirk's transcriptional activity.
- This regulation limits Mirk's function to growth-arrested cells, impacting cellular proliferation control.
- Subnuclear complexes may serve as reservoirs for Mirk and p38, facilitating their interaction and regulation.
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