Related Experiment Video
Updated: Jul 27, 2026

Single-cell Analysis of Bacillus subtilis Biofilms Using Fluorescence Microscopy and Flow Cytometry
Published on: February 15, 2012
Use of fluorescence ratio imaging microscopy and flow cytometry for estimation of cell vitality for Bacillus
Tina Hornbaek1, Jens Dynesen, Mogens Jakobsen
1Fermentation Pilot Plant, Novozymes A/S, Bagsvaerd, Denmark. tho@kvl.dk
Abstract:
For Bacillus licheniformis SJ4628, an organism widely used in the enzyme industry, methods for determination of cell vitality at a single cell level using 5(6)-carboxyfluorescein diacetate succinimidyl ester in combination with fluorescence ratio imaging microscopy and flow cytometry were developed. Immediately after inoculation and during growth, changes in intracellular pH values determined by fluorescence ratio imaging microscopy and in green fluorescence intensities determined by flow cytometry were observed. Correlations between the capacity to multiply and intracellular pH or green fluorescence intensity were demonstrated. Populations of cells not having a pH gradient or exhibiting low fluorescence intensities had significantly longer lag phases than populations of cells with a pH gradient and high fluorescence intensities.

