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Updated: Jan 2, 2026

Quantitative Structure-Activity Relationship, Activity Prediction, and Molecular Dynamics of Non-nucleotide Reverse Transcriptase Inhibitors
Published on: May 9, 2025
Increased long-term mitochondrial toxicity in combinations of nucleoside analogue reverse-transcriptase inhibitors
Ulrich A Walker1, Bernhard Setzer, Nils Venhoff
1Medizinische Universitätsklinik, Department of Reheumatology and Clinical Immunology, Freiburg, Germany.
Background:
Some nucleoside analogue reverse transcriptase inhibitors (NRTI) may cause depletion of mitochondrial (mt) DNA in liver by inhibiting polymerase-gamma. mtDNA depletion may contribute to lactic acidosis, steatohepatitis and liver failure.
Objective:
To evaluate the long-term mitochondrial toxicity of NRTI combinations.
Methods:
The HepG2 human hepatoma cell line was cultivated in the presence of zalcitabine (ddC), didanosine (ddI), stavudine (d4T), lamivudine (3TC), zidovudine (ZDV) and efavirenz at concentrations equivalent to steady-state peak plasma levels (C ), and also in one-third and 10 times C. The NRTI were added to the medium alone or in combination. Control cells were incubated without any NRTI or with efavirenz. Cell growth, lactate production, intracellular lipid droplets, mtDNA and the mtDNA-encoded respiratory chain subunit COX II were monitored over a period of up to 30 days.
Results:
Time- and dose-dependent mtDNA depletion was observed with ddC > ddI > d4T and mtDNA depletion preceded or coincided with a decline in COX II expression, a decrease in cell growth, increased lactate production and increased intracellular lipids. 3TC and efavirenz did not affect any measurement. ZDV increased lactate moderately and cell growth was inhibited, despite normal mtDNA and COX II levels. The negative effects on some measurements were more pronounced in the 3TC-ZDV and ddC-d4T combinations, than in the single-NRTI incubations. The combination of ddI-d4T was not more toxic than ddI alone. Mitochondrial damage by ZDV, d4T, ddI, and ddC did not reach steady-state by day 25. Using a Southern blot technique, mtDNA deletions were never observed.
Conclusion:
The data indicate additive or synergistic long-term mitochondrial toxicity in some NRTI combinations.
Insights
Some nucleoside analogue reverse transcriptase inhibitors (NRTI) can cause long-term mitochondrial toxicity, especially in combination. Certain NRTI combinations showed additive or synergistic effects on mtDNA depletion, impacting liver cell function and viability.
Area of Science:
- Hepatology and Pharmacology
- Mitochondrial Toxicology
- Virology
Background:
- Nucleoside analogue reverse transcriptase inhibitors (NRTI) can deplete mitochondrial DNA (mtDNA) in liver cells by inhibiting polymerase-gamma.
- mtDNA depletion is linked to severe liver conditions like lactic acidosis, steatohepatitis, and liver failure.
Purpose of the Study:
- To investigate the long-term mitochondrial toxicity of various NRTI combinations.
- To assess the impact of NRTI on liver cell function and mtDNA integrity over time.
Main Methods:
- HepG2 human hepatoma cells were exposed to different NRTI (zalcitabine, didanosine, stavudine, lamivudine, zidovudine) and efavirenz at varying concentrations, alone and in combination.
- Cell growth, lactate production, intracellular lipids, mtDNA levels, and COX II expression were monitored for up to 30 days.
Main Results:
- Significant time- and dose-dependent mtDNA depletion was observed with zalcitabine, didanosine, and stavudine, preceding or coinciding with impaired cell growth and increased lactate production.
- Lamivudine and efavirenz showed no significant mitochondrial toxicity. Zidovudine moderately increased lactate and inhibited growth without affecting mtDNA or COX II.
- Some NRTI combinations, like 3TC-ZDV and ddC-d4T, exhibited more pronounced negative effects than single NRTI treatments.
Conclusions:
- Certain NRTI combinations demonstrate additive or synergistic long-term mitochondrial toxicity.
- Understanding these combination effects is crucial for managing NRTI-related liver toxicity.
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