The application of bioinformatics to mass spectrometry

A large collection of bioinformatics question-query pairs over federated knowledge graphs: methodology and applications.

GigaScience·2025

Guidelines for managing and using the digital phenotypes of pluripotent stem cell lines.

Stem cell reports·2024

Functionathon: a manual data mining workflow to generate functional hypotheses for uncharacterized human proteins and its application by undergraduate students.

Database : the journal of biological databases and curation·2021

A high-stringency blueprint of the human proteome.

Nature communications·2020

Brain Metastasis Cell Lines Panel: A Public Resource of Organotropic Cell Lines.

Cancer research·2020

The Feature-Viewer: a visualization tool for positional annotations on a sequence.

Bioinformatics (Oxford, England)·2020

Multi-Organ DIA Proteomics Reveals a Shared Xenobiotic Metabolism Stress Program in a Patient-Derived Xenograft Model.

Proteomics·2026

Mitochondrial Omics in Macrophage Foam Cell Formation and Atherosclerosis.

Proteomics·2026

Disease-Specific Glycopattern Signatures of Serum Small Extracellular Vesicles in Depression, Schizophrenia, and Glioblastoma.

Proteomics·2026

A Deep Learning Model for Prediction of Unknown Gene Functionality: Gene Bio-BERT.

Proteomics·2026

Comparative Evaluation of Adaptive Focused Acoustics- and SP3-Based Workflows for Deep Proteomic Profiling of 30-Year-Old Formalin-Fixed Paraffin-Embedded Tissues.

Proteomics·2026

MODY Mutations in Transcription Factors HNF1A and HNF1B Affect the Production of Interferon Signaling Proteins: Evidence at the Proteome Level.

Proteomics·2026

Siteomix: a PyMOL plugin for the detection, alignment, and similarity analysis of protein‒ligand binding sites.

Journal of computer-aided molecular design·2026

Guardians of splicing: quality control mechanisms of snRNA variants.

Genes & development·2026

A high-throughput strategy for screening umami peptides from Chouguiyu based on peptidomics and machine learning-assisted molecular simulation.

Food research international (Ottawa, Ont.)·2026

PregBase: A comprehensive knowledge base for clinically relevant knowledge representation and biomarker prediction in pregnancy.

Artificial intelligence in medicine·2026

Machine Learning Prediction and Experimental Validation of Antimicrobial Peptide Activity Differences against Gram-Positive and Gram-Negative Bacteria.

ACS omega·2026

Comparative machine learning analysis identifies random forest and adaboost as superior models for the evaluation of semen quality and reproductive hormones.

Frontiers in reproductive health·2026

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The application of bioinformatics to mass spectrometry

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A large collection of bioinformatics question-query pairs over federated knowledge graphs: methodology and applications.

Guidelines for managing and using the digital phenotypes of pluripotent stem cell lines.

Functionathon: a manual data mining workflow to generate functional hypotheses for uncharacterized human proteins and its application by undergraduate students.

A high-stringency blueprint of the human proteome.

Brain Metastasis Cell Lines Panel: A Public Resource of Organotropic Cell Lines.

The Feature-Viewer: a visualization tool for positional annotations on a sequence.

Multi-Organ DIA Proteomics Reveals a Shared Xenobiotic Metabolism Stress Program in a Patient-Derived Xenograft Model.

Mitochondrial Omics in Macrophage Foam Cell Formation and Atherosclerosis.

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Comparative Evaluation of Adaptive Focused Acoustics- and SP3-Based Workflows for Deep Proteomic Profiling of 30-Year-Old Formalin-Fixed Paraffin-Embedded Tissues.

MODY Mutations in Transcription Factors HNF1A and HNF1B Affect the Production of Interferon Signaling Proteins: Evidence at the Proteome Level.

Siteomix: a PyMOL plugin for the detection, alignment, and similarity analysis of protein‒ligand binding sites.

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A high-throughput strategy for screening umami peptides from Chouguiyu based on peptidomics and machine learning-assisted molecular simulation.

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The application of bioinformatics to mass spectrometry

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