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Updated: Aug 17, 2026

Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web
Published on: July 16, 2017
Ramachandran plot on the web
S S Sheik1, P Sundararajan, A S Z Hussain
1Bioinformatics Centre, Supercomputer Education & Research Centre, Indian Institute of Science, Bangalore 560012, India.
Abstract:
A graphics package has been developed to display the main chain torsion angles phi, psi (phi, Psi); (Ramachandran angles) in a protein of known structure. In addition, the package calculates the Ramachandran angles at the central residue in the stretch of three amino acids having specified the flanking residue types. The package displays the Ramachandran angles along with a detailed analysis output. This software is incorporated with all the protein structures available in the Protein Databank.
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