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Updated: Aug 12, 2026

Discovery of New Intracellular Pathogens by Amoebal Coculture and Amoebal Enrichment Approaches
Published on: October 28, 2013
New technologies, human-microbe interactions, and the search for previously unrecognized pathogens
1Department of Microbiology and Immunology, Stanford University, Stanford, California, USA. relman@stanford.edu
Abstract:
Evidence suggests that a significant number of clinically important microbial pathogens remain unrecognized. Observations from the natural world, from patterns of disease in human populations, from the bedside, and from the clinical laboratory all contribute to this body of evidence. A variety of acute and chronic neurologic syndromes illustrate this point; despite features of infection, most cases of aseptic meningitis, encephalitis, and cerebral vasculitis cannot be assigned a microbiologic diagnosis. The development and clinical application of molecular methods have led to the discovery of novel members of the endogenous normal flora as well as putative disease agents. Current challenges include the establishment of criteria for disease causation and further characterization of the human microbiome during states of health. These challenges and the goal of understanding microbial contributions to inflammatory disease may be addressed effectively through the thoughtful integration of modern technologies and clinical insight.
Insights
Many clinically significant microbial pathogens are still undiscovered. Modern molecular methods aid in identifying new disease agents and understanding the human microbiome, but challenges in establishing causation remain.
Area of Science:
- Microbiology
- Infectious Diseases
- Molecular Biology
Background:
- A substantial number of clinically relevant microbial pathogens remain unidentified.
- Neurologic syndromes like aseptic meningitis and encephalitis often lack a specific microbiologic diagnosis.
- Existing diagnostic methods struggle to detect all causative agents of disease.
Purpose of the Study:
- To highlight the existence of unrecognized microbial pathogens.
- To discuss the role of molecular methods in discovering new microbes.
- To address challenges in establishing microbial disease causation and characterizing the human microbiome.
Main Methods:
- Review of evidence from natural observations, disease patterns, and clinical data.
- Application of molecular techniques for microbial identification.
- Analysis of criteria for disease causation and microbiome characterization.
Main Results:
- Molecular methods have identified novel members of the normal flora and potential pathogens.
- Many cases of neurologic infections lack definitive microbiologic diagnoses.
- Challenges persist in defining criteria for disease causation and understanding the healthy human microbiome.
Conclusions:
- The integration of advanced technologies with clinical expertise is crucial for identifying unknown pathogens.
- Further research is needed to characterize the human microbiome and establish microbial roles in inflammatory diseases.
- Improved diagnostic approaches are essential for addressing the gap in recognizing microbial threats.
Related Concept Videos
History of Microbiology
Microorganisms in Medicine and Therapeutics
Microbial Interactions: Cooperation
Introduction to the Human Microbiota
Human Virome
Rapid Identification of Pathogens

