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Related Experiment Videos

Accessing genomic data through XML-based remote procedure calls.

Alberto Riva1, Isaac S Kohane

  • 1Children's Hospital, Informatics Program, Boston, MA 02115, USA.

Proceedings. AMIA Symposium
|December 5, 2002
PubMed
Summary
This summary is machine-generated.

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Public genomic databases are growing, making data integration crucial. SNPper now uses a Remote Procedure Call interface for easier data exchange and analysis of Single Nucleotide Polymorphisms (SNPs).

Area of Science:

  • Bioinformatics
  • Genomics
  • Computational Biology

Background:

  • The increasing volume of public genomic data necessitates improved interoperability for automated knowledge extraction.
  • Current web-based data presentation, while user-friendly, hinders automated data exchange and integration.
  • Effective data mining requires systems that can seamlessly access and process information from diverse genomic sources.

Purpose of the Study:

  • To enhance the SNPper system with a Remote Procedure Call (RPC) interface.
  • To enable client applications to programmatically query SNP data.
  • To facilitate automated data exchange and reuse of Single Nucleotide Polymorphism (SNP) information.

Main Methods:

  • Augmenting the web-based SNPper system with an RPC interface.

Related Experiment Videos

  • Developing functionality for client applications to request SNP data.
  • Implementing data response format as XML documents for easy parsing.

    • Main Results:

    • Successful integration of an RPC interface into the SNPper system.
    • Demonstrated ability for external applications to query SNP data.
    • Generated SNP data in XML format, enabling seamless reuse in other applications.

    Conclusions:

    • The RPC interface significantly improves SNPper's interoperability.
    • XML-formatted data facilitates automated data exchange and integration in genomic research.
    • This approach supports advanced data mining and knowledge discovery from large-scale genomic datasets.