Gene expression profiles of genistein-treated PC3 prostate cancer cells

Yiwei Li1, Fazlul H Sarkar

  • 1Department of Pathology, Karmanos Cancer Institute, Wayne State University School of Medicine, Detroit, MI, USA.

The Journal of Nutrition
|December 7, 2002
PubMed

Insights

Genistein significantly alters gene expression in prostate cancer cells, affecting over 800 genes involved in cell growth, apoptosis, and metastasis. This provides new insights into genistein

Area of Science:

  • Molecular biology
  • Cancer research
  • Genetics

Background:

  • Genistein is known to inhibit prostate cancer cell growth and induce apoptosis.
  • Previous studies implicated nuclear factor kappaB (NF-kappaB) and Akt signaling pathways in genistein's effects.
  • The precise molecular mechanisms require further elucidation.

Purpose of the Study:

  • To comprehensively analyze gene expression profiles altered by genistein treatment in PC3 prostate cancer cells.
  • To identify specific molecular pathways regulated by genistein.
  • To understand the pleiotropic effects of genistein on cancer cell physiology.

Main Methods:

  • Utilized cDNA microarray to interrogate 12,558 known genes.
  • Analyzed gene expression profiles following genistein treatment.
  • Performed cluster analysis based on expression alterations and biological functions.
  • Confirmed findings using reverse transcription-polymerase chain reaction (RT-PCR).

Main Results:

  • Genistein treatment altered the expression of 832 genes (greater than twofold change) with high concordance between experiments.
  • 774 genes were down-regulated and 58 genes were up-regulated.
  • Regulated genes are critically involved in cell growth, cell cycle, apoptosis, signaling, angiogenesis, invasion, and metastasis.

Conclusions:

  • Genistein affects the expression of a large number of genes controlling cell survival and behavior.
  • Gene expression profiles reveal comprehensive molecular mechanisms for genistein's effects.
  • Genistein-induced gene regulation offers potential for prostate cancer chemoprevention and therapy.

Related Concept Videos

Cell Specific Gene Expression01:58

Cell Specific Gene Expression

Multicellular organisms contain a variety of structurally and functionally distinct cell types, but the DNA in all the cells originated from the same parent cells. The differences in the cells can be attributed to the differential gene expression. Liver cells, whose functions include detoxification of blood, production of bile to metabolize fats, and synthesis of proteins essential for metabolism, must express a specific set of genes to perform their functions. Gene expression also varies with...
16.6K
Cell Specific Gene Expression01:58

Cell Specific Gene Expression

No description available
5.6K
What is Gene Expression?01:42

What is Gene Expression?

Overview
Gene expression is the process in which DNA directs the synthesis of functional products, that is, proteins. Cells can regulate gene expression at various stages. It allows organisms to generate different cell types and enables cells to adapt to internal and external factors.
Genetic Information Flows from DNA to RNA to Protein
A gene is a stretch of DNA that serves as the blueprint for functional RNAs and proteins. Since DNA is made up of nucleotides and proteins consist of amino...
197.0K
What is Gene Expression?01:36

What is Gene Expression?

A gene is a stretch of DNA that serves as the blueprint for functional RNAs and proteins. Since DNA is comprised  of nucleotides and proteins are comprised of amino acids, a mediator is required to convert the information encoded in DNA into proteins. This mediator is the messenger RNA (mRNA). mRNA copies the blueprint from DNA by a process called transcription. In eukaryotes, transcription occurs in the nucleus by complementary base-pairing with the DNA template. The mRNA is then...
11.5K
Chromatin Position Affects Gene Expression02:35

Chromatin Position Affects Gene Expression

Chromatin is the massive complex of DNA and proteins packaged inside the nucleus. The complexity of chromatin folding and how it is packaged inside the nucleus greatly influences  access to genetic information. Generally, the nucleus' periphery is considered transcriptionally repressive, while the cell's interior is considered a transcriptionally active area. 
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the...
24.9K