Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Videos

Genome-tools: a flexible package for genome sequence analysis.

William Lee1, Swaine L Chen

  • 1Stanford University School of Medicine, Stanford, CA, USA.

Biotechniques
|December 31, 2002
PubMed
Summary
This summary is machine-generated.

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Volumetric analysis of cervical intervertebral discs: Reference values for interventional cervical disc procedures.

Interventional pain medicine·2026
Same author

A nationwide mapping of services for high users of emergency departments in England: observational study.

BJPsych bulletin·2026
Same author

Spinal cord FDG PET uptake in healthy adults: an AI-driven segmentation study.

European spine journal : official publication of the European Spine Society, the European Spinal Deformity Society, and the European Section of the Cervical Spine Research Society·2026
Same author

Balanced Extended Vision Procedure: Preclinical Analysis of a Non-diffractive Approach to Full Range of Vision After Cataract Surgery.

Journal of refractive surgery (Thorofare, N.J. : 1995)·2026
Same author

Evaluation of physiological bone metabolic activity in the spine with 18F-fluorodeoxyglucose and 18F-sodium fluoride PET: associations with degenerative risk factors.

Nuclear medicine communications·2026
Same author

Paediatric mental health liaison services in England: findings from a national survey.

BMC health services research·2026
Same journal

Investigating the interactomic landscape of survival motor neuron (SMN) and the SMNΔ7 truncated protein.

BioTechniques·2026
Same journal

Antigen retrieval-immunofluorescence on free floating sections to visualize the liver lobule and its cellular makeup.

BioTechniques·2026
Same journal

Special approach of droplet digital polymerase chain reaction (ddPCR) for transgene stability of a Chinese hamster ovary (CHO) cell line.

BioTechniques·2026
Same journal

Strand-specific quantification of L1 ORF0 and related transcripts by multiplex reverse transcription with tagged primers.

BioTechniques·2026
Same journal

Why and when should we choose digital PCR?

BioTechniques·2026
Same journal

Quantitative and unbiased lung alveolar septum assessment in an LPS experimental mouse model using 2D-spatial correlation image analysis from hematoxylin and eosin slides.

BioTechniques·2026
See all related articles

Genome-tools provides an accessible Perl interface for managing genome sequence data. This flexible package aids both novice and expert users in accessing and analyzing genomic information.

Area of Science:

  • Bioinformatics
  • Genomics
  • Computational Biology

Background:

  • Accessing and analyzing large-scale genome sequence data presents challenges.
  • Limited user-friendly informatics tools are available for newly sequenced genomes.

Purpose of the Study:

  • To introduce genome-tools, a Perl-based system for simplified genome sequence information access.
  • To provide a flexible and extensible platform for both programmers and non-programmers.

Main Methods:

  • Genome-tools utilizes standard GenBank genome files for data input.
  • A Web-based front end offers an intuitive interface for genome searching.
  • The system is designed to handle evolving genome annotation files.

Main Results:

Related Experiment Videos

  • Genome-tools facilitates easy access to diverse genome sequence information.
  • The package supports the development of cross-genomic analyses.
  • It runs on multiple platforms including Unix, Windows, and Mac OS.

Conclusions:

  • Genome-tools simplifies genomic data access, benefiting molecular biologists.
  • Its flexibility and accessibility make it a valuable tool for bioinformatics research.