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Updated: Sep 27, 2026

Continuous Fluorescence-Based Endonuclease-Coupled DNA Methylation Assay to Screen for DNA Methyltransferase Inhibitors
Published on: August 5, 2022
Differential expression of DNA-methyltransferases in drug resistant murine neuroblastoma cells
Yi Y Qiu1, Bernard L Mirkin, Rama S Dwivedi
1Department of Pediatrics, Children's Memorial Hospital, Children's Memorial Institute for Education and Research, Feinberg School of Medicine, Medical School, 2300 Children's Plaza, Mail Box no. 204, Chicago, IL 60614-3394, USA.
Abstract:
Neuroblastoma tumors frequently become drug resistant during the process of chemotherapy resulting in unfavorable clinical outcomes. Development of sustained drug resistance in neuroblastoma is a major problem in successful treatment. To explore the role of DNA-methyltransferases (Dnmt) in acquired drug resistance of neuroblastoma, the present investigation was carried out to study the expression of Dnmtl, Dnmt3a, and Dnmt3b in drug resistant murine neuroblastoma cells, in an in vitro model system. We have analyzed the expression of Dnmtl, Dnmt3a, and Dnmt3b methyltransferases in wild type and drug resistant murine neuroblastoma cells by using Western blot, immunofluorescence microscopy, semiquantitative and quantitative real time RT-PCR analyses. The present investigation demonstrates that total Dnmt enzymatic activity was increased two-fold (P < 0.001) with a 33% increase in global DNA methylation rate in drug resistant cells. Results of the Western blot, immunofluorescence microscopy, RT-PCR, and quantitative real time RT-PCR analysis demonstrated that Dnmt1 and Dnmt3b expression increased significantly (P < 0.001) in drug resistant cells when compared with wild type cells. Dnmt3a expression did not reveal any change between wild type and drug resistant cells. These findings suggest that Dnmtases are differentially expressed in drug resistant murine neuroblastoma cells and overexpression of Dnmtl and Dnmt3b may contribute towards loss of function of the growth regulatory or tumor suppressor genes by methylation of their 'CpG' region and subsequently silencing of their expression. The products of these methylated genes may, thus, confer a high level of drug resistant phenotype in drug resistant neuroblastoma cells.
Insights
Drug resistance in neuroblastoma is a major challenge. This study found increased DNA-methyltransferases (Dnmt) 1 and 3b expression in resistant cells, suggesting their role in chemotherapy failure.
Area of Science:
- Oncology
- Epigenetics
- Molecular Biology
Background:
- Neuroblastoma often develops drug resistance, leading to poor treatment outcomes.
- Understanding the mechanisms of acquired drug resistance is crucial for effective neuroblastoma therapy.
Purpose of the Study:
- To investigate the role of DNA-methyltransferases (Dnmt) in acquired drug resistance in neuroblastoma.
- To analyze the expression of Dnmt1, Dnmt3a, and Dnmt3b in drug-resistant murine neuroblastoma cells.
Main Methods:
- Western blot analysis
- Immunofluorescence microscopy
- Semiquantitative and quantitative real-time RT-PCR
- Assay of total Dnmt enzymatic activity and global DNA methylation rate
Main Results:
- Drug-resistant neuroblastoma cells showed a two-fold increase in total Dnmt enzymatic activity and a 33% increase in global DNA methylation.
- Significant overexpression of Dnmt1 and Dnmt3b was observed in drug-resistant cells compared to wild-type cells.
- Dnmt3a expression levels remained unchanged between wild-type and drug-resistant neuroblastoma cells.
Conclusions:
- Differential expression of Dnmtases occurs in drug-resistant neuroblastoma.
- Overexpression of Dnmt1 and Dnmt3b may contribute to drug resistance by methylating and silencing tumor suppressor or growth regulatory genes.
- This epigenetic silencing confers a drug-resistant phenotype in neuroblastoma cells.
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