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Updated: Sep 27, 2026

Characterizing Exon Skipping Efficiency in DMD Patient Samples in Clinical Trials of Antisense Oligonucleotides
Published on: May 7, 2020
Heterogous dystrophin mRNA produced by a novel splice acceptor site mutation in intermediate dystrophinopathy
Kayo Adachi1, Yasuhiro Takeshima, Hiroko Wada
1Division of Molecular Medicine, Kobe University Graduate School of Medicine, Kobe, Japan.
Abstract:
The molecular background of an intermediate type of dystrophinopathy [Duchenne and Becker muscular dystrophy (DMD/BMD)] remains to be clarified, and out-of -frame and in-frame mutations of the dystrophin gene are shown to be causes of DMD and BMD, respectively. In a boy with this disease, dystrophin mRNA extracted from lymphocytes and muscle were analyzed both qualitatively and quantitatively using reverse transcription PCR. Three different dystrophin mRNA were found to be produced via the use of three cryptic splice acceptor sites resulting from a novel point mutation of 2831-2A>G at the conserved splice acceptor site of intron 20. One of three mRNA showed an insertion of six nucleotides of intron 20 between exons 20 and 21 (dys+6) that encoded two novel amino acids in the rod domain of dystrophin. Two other mRNA species showed an insertion of seven nucleotides of intron 20 between exons 20 and 21 (dys+7) or a seven-nucleotide deletion in exon 21 (dys-7). Quantitative analysis of each dystrophin mRNA expressed in the boy's skeletal muscle disclosed that around 95% and 5% of dystrophin mRNAs were dys-7 and dys+6, respectively, whereas these two mRNA were almost equally expressed in lymphocytes. It is suggested that production of a small fraction of in-frame mRNA in muscle explains the molecular background of the intermediate type of dystrophinopathy in the index case. This finding underlines the potential of genetic therapeutic strategies aimed to modify mRNA in DMD to generate a much milder disease.
Insights
A novel mutation in the dystrophin gene causes intermediate dystrophinopathy by producing altered mRNA. A small fraction of in-frame mRNA in muscle cells may explain this milder form of muscular dystrophy.
Area of Science:
- Molecular biology
- Genetics
- Biochemistry
Background:
- Duchenne and Becker muscular dystrophies (DMD/BMD) are dystrophinopathies with distinct genetic causes: out-of-frame mutations for DMD and in-frame for BMD.
- The molecular basis for intermediate forms of dystrophinopathy remains unclear.
Observation:
- A patient with intermediate dystrophinopathy was studied using reverse transcription PCR to analyze dystrophin mRNA from lymphocytes and muscle.
- A novel point mutation (2831-2A>G) in intron 20 led to the use of cryptic splice acceptor sites, generating three distinct dystrophin mRNA variants.
- These variants included dys+6 (6-nucleotide insertion from intron 20), dys+7 (7-nucleotide insertion from intron 20), and dys-7 (7-nucleotide deletion in exon 21).
Findings:
- Quantitative analysis revealed that in the patient's skeletal muscle, dys-7 mRNA constituted approximately 95% and dys+6 mRNA about 5%.
- In contrast, both dys-7 and dys+6 mRNA were found in nearly equal proportions in lymphocytes.
- The predominant expression of the in-frame dys-7 variant in muscle is proposed as the molecular basis for the intermediate phenotype.
Implications:
- This study elucidates the molecular mechanism underlying an intermediate dystrophinopathy.
- The findings highlight the potential for mRNA-targeting therapeutic strategies to modify dystrophin expression and potentially mitigate DMD severity.
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