Related Experiment Video
Updated: Sep 27, 2026

Visualizing and Quantifying Endonuclease-Based Site-Specific DNA Damage
Published on: August 21, 2021
DNA repair in terminally differentiated cells
Thierry Nouspikel1, Philip C Hanawalt
1Department of Biological Sciences, Stanford University, Stanford, CA 94305-5020, USA.
Abstract:
Terminally differentiated cells do not replicate their genomic DNA, and could therefore dispense with the task of removing DNA damage from the non-essential bulk of their genome, as long as they are able to maintain the integrity of the genes that must be expressed. There is increasing experimental evidence that this is indeed the case, at least for some repair pathways such as nucleotide excision repair (NER). In this review, we examine a number of terminally differentiated cell systems in which it has been demonstrated that DNA repair is attenuated at the global genome level, but maintained in expressed genes. How these cells manage to repair transcribed genes is not yet fully elucidated, but there are indications that the transcription-coupled repair (TCR) pathway could maintain integrity of the transcribed strand (TS) in the active genes. We have observed in neurons that the non-transcribed strand (NTS) of active genes is also well repaired, a phenomenon that we have named differentiation-associated repair (DAR). It is conceivable that DAR is necessary to maintain the integrity of the template strand that is needed by TCR to complete the repair of lesions in the TS of essential expressed genes with high fidelity.
Insights
Terminally differentiated cells prioritize DNA repair in essential genes, not the entire genome. This review explores how DNA repair pathways like transcription-coupled repair maintain gene integrity in non-replicating cells.
Area of Science:
- Molecular Biology
- Genetics
- Cell Biology
Background:
- Terminally differentiated cells cease DNA replication but must maintain essential gene integrity.
- DNA repair mechanisms, such as nucleotide excision repair (NER), show altered activity in these cells.
- Evidence suggests DNA repair is globally attenuated but preserved in expressed genes.
Purpose of the Study:
- To review evidence of differential DNA repair in terminally differentiated cells.
- To explore mechanisms maintaining DNA integrity in expressed genes.
- To introduce and discuss differentiation-associated repair (DAR).
Main Methods:
- Review of experimental studies on terminally differentiated cell systems.
- Analysis of DNA repair pathway activity (e.g., NER, TCR).
- Observation of DNA repair patterns in specific cell types, such as neurons.
Main Results:
- DNA repair is reduced genome-wide but maintained in actively transcribed genes.
- Transcription-coupled repair (TCR) likely preserves the transcribed strand (TS) of active genes.
- Neurons exhibit repair on the non-transcribed strand (NTS) of active genes, termed differentiation-associated repair (DAR).
Conclusions:
- Terminally differentiated cells employ specialized DNA repair strategies.
- DAR may ensure the integrity of the template strand for high-fidelity TCR.
- These findings highlight adaptive DNA maintenance in non-replicating cells.
Related Concept Videos
Overview of DNA Repair
Chemically...
Overview of DNA Repair
Chemically...
Fixing Double-strand Breaks
Fixing Double-strand Breaks
Nucleotide Excision Repair
Cells are regularly exposed to mutagens—factors in the environment that can damage DNA and generate mutations. UV radiation is one of the most common mutagens and is estimated to introduce a significant number of changes in DNA. These include bends or kinks in the structure, which can block DNA replication or transcription. If these errors are not fixed, the damage can cause mutations, which in turn can result in cancer or disease depending on which sequences are...
Nucleotide Excision Repair

