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Pise: software for building bioinformatics webs.

Don Gilbert1

  • 1Biology Department, and Center for Genomics and Bioinformatics, Indiana University, Bloomington 47405, USA. gilbertd@bio.indiana.edu

Briefings in Bioinformatics
|January 4, 2003
PubMed
Summary
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Pise software simplifies bioinformatics by creating user-friendly web interfaces for command-line tools. This adaptable tool enables easy construction and deployment of custom bioinformatics web services.

Area of Science:

  • Bioinformatics
  • Computational Biology
  • Software Engineering

Background:

  • Bioinformatics tools often rely on complex command-line operations.
  • Developing user-friendly interfaces for these tools can be challenging and time-consuming.
  • There is a need for adaptable software to streamline the creation of web services for bioinformatics applications.

Purpose of the Study:

  • To introduce Pise, an interface construction software for bioinformatics.
  • To demonstrate Pise's capability in creating accessible interfaces for command-line bioinformatics tools.
  • To highlight Pise's utility in developing custom bioinformatics web services.

Main Methods:

  • Pise facilitates the creation of common, easy-to-use interfaces for command-line bioinformatics applications.

Related Experiment Videos

  • The software is designed to be adaptable to new bioinformatics tools.
  • Features include program chaining and Unix system batch controls.

    • Main Results:

    • Pise enables the development of web interfaces for existing bioinformatics software.
    • It supports the integration of new bioinformatics tools through its adaptable design.
    • Users can build and utilize their own bioinformatics web services effectively.

    Conclusions:

    • Pise offers an attractive solution for building and deploying bioinformatics web services.
    • The software simplifies access to command-line bioinformatics tools through intuitive interfaces.
    • Pise enhances the usability and accessibility of bioinformatics resources.