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Biobanking of Human Aqueous and Vitreous Liquid Biopsies for Molecular Analyses

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The Stanford Microarray Database: data access and quality assessment tools.

Jeremy Gollub¹, Catherine A Ball, Gail Binkley

¹Department of Genetics, Center for Clinical Sciences Research, 269 Campus Drive, Room 2255b, Stanford University, Stanford, CA 94305-5163, USA.

Nucleic Acids Research

|January 10, 2003

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The Stanford Microarray Database (SMD) offers public access to over 3500 microarrays and analysis tools for researchers. This resource supports the scientific community by sharing data and code for microarray research.

Area of Science:

Genomics
Bioinformatics
Computational Biology

Background:

The Stanford Microarray Database (SMD) is a vital resource for microarray research.
It serves both Stanford investigators and the broader scientific community.

Purpose of the Study:

To describe new tools for accessing, assessing quality, and analyzing public microarray data.
To highlight SMD's role as a comprehensive resource for the scientific community.

Main Methods:

Providing free access to source code.
Offering full public access to published microarray data.
Developing tools for data exploration and analysis.

Main Results:

SMD hosts data from 3500 microarrays, including data from 85 publications.

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The database and its data volume are rapidly expanding.

New tools enhance data accessibility, quality assessment, and analysis.

Conclusions:

SMD is a valuable and expanding resource for the scientific community.
The database facilitates research through data sharing and advanced analytical tools.
Continued development of SMD tools will further support genomic research.